A novel antibacterial peptide recognition algorithm based on BERT

Deep-AmPEP30: Improve Short Antimicrobial Peptides Prediction with Deep Learning

(2020) Jielu Yan et al.   Molecular Therapy-Nucleic Acids

Automatic construction of molecular similarity networks for visual graph mining in chemical space of bioactive peptides: an unsupervised learning approach

(2020) Longendri Aguilera-Mendoza et al.   Scientific Reports

Lc-NKlysin-1A, a multifunctional antimicrobial peptide

(2019) Wenjie Luo et al.   TOXICON

Graph-based data integration from bioactive peptide databases of pharmaceutical interest: toward an organized collection enabling visual network analysis

(2019) Longendri Aguilera-Mendoza et al.   BIOINFORMATICS

An advanced approach to identify antimicrobial peptides and their function types for penaeus through machine learning strategies

(2019) Yuan Lin et al.   BMC BIOINFORMATICS

A parallel computing-based Deep Attention model for named entity recognition

(2019) Xiaojun Liu et al.   JOURNAL OF SUPERCOMPUTING

Deep learning improves antimicrobial peptide recognition

(2018) Daniel Veltri et al.   BIOINFORMATICS

AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest

(2018) Pratiti Bhadra et al.   Scientific Reports

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences

(2015) Longendri Aguilera-Mendoza et al.   BIOINFORMATICS

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides: Table 1.

(2015) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides

(2015) Malak Pirtskhalava et al.   NUCLEIC ACIDS RESEARCH

APD3: the antimicrobial peptide database as a tool for research and education

(2015) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

CAMP: Collection of sequences and structures of antimicrobial peptides

(2013) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses

(2013) Abid Qureshi et al.   NUCLEIC ACIDS RESEARCH

LAMP: A Database Linking Antimicrobial Peptides

(2013) Xiaowei Zhao et al.   PLoS One

Analysis and Prediction of Highly Effective Antiviral Peptides Based on Random Forests

(2013) Kuan Y. Chang et al.   PLoS One

DADP: the database of anuran defense peptides

(2012) Mario Novković et al.   BIOINFORMATICS

Predicting the Activity of Antimicrobial Peptides with Amino Acid Topological Information

(2012) Mao Shu et al.   Medicinal Chemistry

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

APD2: the updated antimicrobial peptide database and its application in peptide design

(2008) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH