Genome-wide association analysis reveals quantitative trait loci and candidate genes involved in yield components under multiple field environments in cotton (Gossypium hirsutum)

Genome-wide association reveals genetic variation of lint yield components under salty field conditions in cotton (Gossypium hirsutum L.)

(2020) Guozhong Zhu et al.   BMC PLANT BIOLOGY

Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton

(2020) Li-Min Lv et al.   BMC PLANT BIOLOGY

Genomic Insight into Differentiation and Selection Sweeps in the Improvement of Upland Cotton

(2020) Mian Faisal Nazir et al.   Plants-Basel

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Genome-wide association study of four yield-related traits at the R6 stage in soybean

(2019) Xiangnan Li et al.   BMC GENETICS

Dissection of the genetic variation and candidate genes of lint percentage by a genome-wide association study in upland cotton

(2019) Chengxiang Song et al.   THEORETICAL AND APPLIED GENETICS

Analysis of Drought Tolerance and Associated Traits in Upland Cotton at the Seedling Stage

(2019) Hai-Ming Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

An EMS-induced mutation in a tetratricopeptide repeat-like superfamily protein gene (Ghir_A12G008870) on chromosome A12 is responsible for the liy short fiber phenotype in cotton

(2019) David D. Fang et al.   THEORETICAL AND APPLIED GENETICS

Genetic Basis of Fiber Improvement and Decreased Stress Tolerance in Cultivated Versus Semi-Domesticated Upland Cotton

(2019) Guozhong Zhu et al.   Frontiers in Plant Science

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

(2018) Zhiying Ma et al.   NATURE GENETICS

A genome-wide association study uncovers novel genomic regions and candidate genes of yield-related traits in upland cotton

(2018) Zhengwen Sun et al.   THEORETICAL AND APPLIED GENETICS

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

(2017) Maojun Wang et al.   NATURE GENETICS

agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

(2017) Tian Tian et al.   NUCLEIC ACIDS RESEARCH

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Suppressing a Putative Sterol Carrier Gene Reduces Plasmodesmal Permeability and Activates Sucrose Transporter Genes during Cotton Fiber Elongation

(2017) Zhiyuan Zhang et al.   PLANT CELL

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

The Brassinosteroid-Activated BRI1 Receptor Kinase Is Switched off by Dephosphorylation Mediated by Cytoplasm-Localized PP2A B′ Subunits

(2016) Ruiju Wang et al.   Molecular Plant

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

(2016) Shi-Bo Wang et al.   Scientific Reports

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

(2015) Xia Liu et al.   Scientific Reports

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

(2015) Daojun Yuan et al.   Scientific Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Boosting Seed Development as a New Strategy to Increase Cotton Fiber Yield and Quality

(2013) Yong-Ling Ruan   Journal of Integrative Plant Biology

A Superfamily of Actin-Binding Proteins at the Actin-Membrane Nexus of Higher Plants

(2012) Michael J. Deeks et al.   CURRENT BIOLOGY

Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L.

(2011) Renzhong Liu et al.   MOLECULAR BREEDING

Evidence for the Role of Transfer Cells in the Evolutionary Increase in Seed and Fiber Biomass Yield in Cotton

(2010) Deborah A. Pugh et al.   Molecular Plant

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L.

(2008) Hongde Qin et al.   THEORETICAL AND APPLIED GENETICS