- Home
- Publications
- Publication Search
- Publication Details
Title
Detecting copy number alterations in RNA-Seq using SuperFreq
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2021-06-15
DOI
10.1093/bioinformatics/btab440
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data
- (2020) Akdes Serin Harmanci et al. Nature Communications
- SuperFreq: Integrated mutation detection and clonal tracking in cancer
- (2020) Christoffer Flensburg et al. PLoS Computational Biology
- PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia
- (2019) Zhaohui Gu et al. NATURE GENETICS
- CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones
- (2018) Sören Müller et al. BIOINFORMATICS
- Universal Patterns of Selection in Cancer and Somatic Tissues
- (2018) Iñigo Martincorena et al. CELL
- Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
- (2018) Jean Fan et al. GENOME RESEARCH
- RNA-sequencing analysis of core binding factor AML identifies recurrent ZBTB7A mutations and defines RUNX1-CBFA2T3 fusion signature
- (2016) V.-P. Lavallee et al. BLOOD
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- The transcriptomic landscape and directed chemical interrogation of MLL-rearranged acute myeloid leukemias
- (2015) Vincent-Philippe Lavallée et al. NATURE GENETICS
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- Precise inference of copy number alterations in tumor samples from SNP arrays
- (2013) Gary K. Chen et al. BIOINFORMATICS
- Pan-cancer patterns of somatic copy number alteration
- (2013) Travis I Zack et al. NATURE GENETICS
- The Cancer Genome Atlas Pan-Cancer analysis project
- (2013) John N Weinstein et al. NATURE GENETICS
- Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
- (2013) NEW ENGLAND JOURNAL OF MEDICINE
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Absolute quantification of somatic DNA alterations in human cancer
- (2012) Scott L Carter et al. NATURE BIOTECHNOLOGY
- The landscape of somatic copy-number alteration across human cancers
- (2010) Rameen Beroukhim et al. NATURE
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started