Long reads capture simultaneous enhancer–promoter methylation status for cell-type deconvolution

Epigenome-wide association study in healthy individuals identifies significant associations with DNA methylation and PBMC extract VEGF-A concentration

(2020) Vesna Gorenjak et al.   Clinical Epigenetics

Long-read single-molecule maps of the functional methylome

(2019) Hila Sharim et al.   GENOME RESEARCH

Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight

(2019) Leanne K. Küpers et al.   Nature Communications

Complete deconvolution of cellular mixtures based on linearity of transcriptional signatures

(2019) Konstantin Zaitsev et al.   Nature Communications

The ENCODE Blacklist: Identification of Problematic Regions of the Genome

(2019) Haley M. Amemiya et al.   Scientific Reports

Principles of DNA methylation and their implications for biology and medicine

(2018) Yuval Dor et al.   LANCET

The UCSC Genome Browser database: 2019 update

(2018) Maximilian Haeussler et al.   NUCLEIC ACIDS RESEARCH

GENCODE reference annotation for the human and mouse genomes

(2018) Adam Frankish et al.   NUCLEIC ACIDS RESEARCH

Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines

(2017) Qin Cao et al.   NATURE GENETICS

Epigenome-wide association studies identify DNA methylation associated with kidney function

(2017) Audrey Y. Chu et al.   Nature Communications

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition

(2013) Dvir Aran et al.   BIOESSAYS

DNA Methylation of Transcriptional Enhancers and Cancer Predisposition

(2013) Dvir Aran et al.   CELL

Integrative eQTL-Based Analyses Reveal the Biology of Breast Cancer Risk Loci

(2013) Qiyuan Li et al.   CELL

DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes

(2013) Dvir Aran et al.   GENOME BIOLOGY

Resolution limit for DNA barcodes in the Odijk regime

(2012) Yanwei Wang et al.   Biomicrofluidics

DNA methylation arrays as surrogate measures of cell mixture distribution

(2012) Eugene Houseman et al.   BMC BIOINFORMATICS

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

DNA Methylation: Its Role in Cancer Development and Therapy

(2008) C. Kurkjian et al.   CURRENT PROBLEMS IN CANCER