Population genomics of the Anthropocene: urbanization is negatively associated with genome-wide variation in white-footed mouse populations

Conspicuous genetic structure belies recent dispersal in an endangered beach mouse (Peromyscus polionotus trissyllepsis)

(2015) James D. Austin et al.   CONSERVATION GENETICS

Sun skink landscape genomics: assessing the roles of micro-evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented landscape

(2015) Anthony J. Barley et al.   MOLECULAR ECOLOGY

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

(2015) Joseph D. Manthey et al.   MOLECULAR ECOLOGY

Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren (Campylorhynchus brunneicapillus)

(2015) Kelly R. Barr et al.   MOLECULAR ECOLOGY

Contemporary human-altered landscapes and oceanic barriers reduce bumble bee gene flow

(2015) S. Jha   MOLECULAR ECOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

(2015) Michael G. Harvey et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Defining the epoch we live in

(2015) W. F. Ruddiman et al.   SCIENCE

Peromyscus mice as a model for studying natural variation

(2015) Nicole L Bedford et al.   eLife

Habitat fragmentation and its lasting impact on Earth's ecosystems

(2015) N. M. Haddad et al.   Science Advances

Adaptive evolution in urban ecosystems

(2014) Colin M. Donihue et al.   AMBIO

Habitat fragmentation and genetic variability of tetrapod populations

(2014) F. A. Rivera-Ortíz et al.   ANIMAL CONSERVATION

Anthropopressure gradients and the population genetic structure of Apodemus agrarius

(2014) Tomasz Gortat et al.   CONSERVATION GENETICS

Disease and freeways drive genetic change in urban bobcat populations

(2014) Laurel E. K. Serieys et al.   Evolutionary Applications

Using genomics to characterize evolutionary potential for conservation of wild populations

(2014) Katherine A. Harrisson et al.   Evolutionary Applications

Climate change, adaptation, and phenotypic plasticity: the problem and the evidence

(2014) Juha Merilä et al.   Evolutionary Applications

Urban ecology: advancing science and society

(2014) Colby J Tanner et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Ecological homogenization of urban USA

(2014) Peter M Groffman et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Outstanding challenges for urban conservation research and action

(2014) Assaf Shwartz et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map)

(2014) Jane Kenney-Hunt et al.   MAMMALIAN GENOME

Isolation by environment

(2014) Ian J. Wang et al.   MOLECULAR ECOLOGY

Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations

(2014) Stephen E. Harris et al.   Molecular Ecology Resources

Urban park characteristics, genetic variation, and historical demography of white-footed mouse (Peromyscus leucopus) populations in New York City

(2014) Jason Munshi-South et al.   PeerJ

DISENTANGLING THE EFFECTS OF GEOGRAPHIC AND ECOLOGICAL ISOLATION ON GENETIC DIFFERENTIATION

(2013) Gideon S. Bradburd et al.   EVOLUTION

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Small effective size limits performance in a novel environment

(2013) Christopher G. Oakley   Evolutionary Applications

Evolutionary and plastic responses to climate change in terrestrial plant populations

(2013) Steven J. Franks et al.   Evolutionary Applications

Recent advances in recreation ecology and the implications of different relationships between recreation use and ecological impacts

(2013) Christopher A Monz et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Current approaches using genetic distances produce poor estimates of landscape resistance to interindividual dispersal

(2013) Tabitha A. Graves et al.   MOLECULAR ECOLOGY

Candidate gene polymorphisms for behavioural adaptations during urbanization in blackbirds

(2013) J. C. Mueller et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

An Experimental Test of Competition among Mice, Chipmunks, and Squirrels in Deciduous Forest Fragments

(2013) Jesse L. Brunner et al.   PLoS One

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area

(2013) Stephen E. Harris et al.   PLoS One

Used planet: A global history

(2013) E. C. Ellis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accelerating Improvement of Livestock with Genomic Selection

(2013) Theo Meuwissen et al.   Annual Review of Animal Biosciences

Urban wildlife research: Past, present, and future

(2012) Seth B. Magle et al.   BIOLOGICAL CONSERVATION

EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE

(2012) Vera S. Domingues et al.   EVOLUTION

Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City

(2012) JASON MUNSHI-SOUTH   MOLECULAR ECOLOGY

Approaching a state shift in Earth’s biosphere

(2012) Anthony D. Barnosky et al.   NATURE

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Global forecasts of urban expansion to 2030 and direct impacts on biodiversity and carbon pools

(2012) K. C. Seto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tree and impervious cover change in U.S. cities

(2012) David J. Nowak et al.   URBAN FORESTRY & URBAN GREENING

Standing Genetic Variation and the Evolution of Drug Resistance in HIV

(2012) Pleuni Simone Pennings   PLoS Computational Biology

Ecological consequences of fragmentation and deforestation in an urban landscape: a case study

(2012) W. C. Zipperer et al.   URBAN ECOSYSTEMS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Green corridors in urban landscapes affect the arthropod communities of domestic gardens

(2011) Alan Vergnes et al.   BIOLOGICAL CONSERVATION

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Time for a change: dynamic urban ecology

(2011) Cristina E. Ramalho et al.   TRENDS IN ECOLOGY & EVOLUTION

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

The impacts of roads and other infrastructure on mammal and bird populations: A meta-analysis

(2010) Ana Benítez-López et al.   BIOLOGICAL CONSERVATION

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Rapid, pervasive genetic differentiation of urban white-footed mouse (Peromyscus leucopus) populations in New York City

(2010) JASON MUNSHI-SOUTH et al.   MOLECULAR ECOLOGY

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Spurious correlations and inference in landscape genetics

(2010) SAMUEL A. CUSHMAN et al.   MOLECULAR ECOLOGY

Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data

(2010) PIERRE LEGENDRE et al.   Molecular Ecology Resources

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A quantitative review of heterozygosity-fitness correlations in animal populations

(2009) J. R. CHAPMAN et al.   MOLECULAR ECOLOGY

Standing genetic variation inFRIGIDAmediates experimental evolution of flowering time inArabidopsis

(2009) NORA SCARCELLI et al.   MOLECULAR ECOLOGY

Molecular road ecology: exploring the potential of genetics for investigating transportation impacts on wildlife

(2009) NIKO BALKENHOL et al.   MOLECULAR ECOLOGY

Experimental evolution reveals natural selection on standing genetic variation

(2009) Henrique Teotónio et al.   NATURE GENETICS

Novel ecosystems: implications for conservation and restoration

(2009) Richard J. Hobbs et al.   TRENDS IN ECOLOGY & EVOLUTION

Scaling up from gardens: biodiversity conservation in urban environments

(2009) Mark A. Goddard et al.   TRENDS IN ECOLOGY & EVOLUTION

The Role of Geography in Human Adaptation

(2009) Graham Coop et al.   PLoS Genetics

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

Reverse engineering the genotype–phenotype map with natural genetic variation

(2008) Matthew V. Rockman   NATURE

Adaptive evolution in invasive species

(2008) Peter J. Prentis et al.   TRENDS IN PLANT SCIENCE

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION