A Novel Framework to Predict Relative Habitat Selection in Aquatic Systems: Applying Machine Learning and Resource Selection Functions to Acoustic Telemetry Data From Multiple Shark Species

Spatial Connectivity and Drivers of Shark Habitat Use Within a Large Marine Protected Area in the Caribbean, The Bahamas Shark Sanctuary

(2021) Austin J. Gallagher et al.   Frontiers in Marine Science

Climate Change Drives Poleward Increases and Equatorward Declines in Marine Species

(2020) Reuben A. Hastings et al.   CURRENT BIOLOGY

Shark movement strategies influence poaching risk and can guide enforcement decisions in a large, remote Marine Protected Area

(2020) David M.P. Jacoby et al.   JOURNAL OF APPLIED ECOLOGY

Changing role of coral reef marine reserves in a warming climate

(2020) Nicholas A. J. Graham et al.   Nature Communications

Wolf habitat selection when sympatric or allopatric with brown bears in Scandinavia

(2020) Andrés Ordiz et al.   Scientific Reports

Balancing Current and Future Reproductive Investment: Variation in Resource Selection During Stages of Reproduction in a Long-Lived Herbivore

(2020) Levi J. Heffelfinger et al.   Frontiers in Ecology and Evolution

Application of machine learning algorithms to identify cryptic reproductive habitats using diverse information sources

(2020) Jacob W. Brownscombe et al.   OECOLOGIA

Scale of Biotelemetry Data Influences Ecological Interpretations of Space and Habitat Use in Yellowtail Snapper

(2020) Ashleigh J. Novak et al.   Marine and Coastal Fisheries

Grouper Tales: Use of Acoustic Telemetry to Evaluate Grouper Movements at Western Dry Rocks in the Florida Keys

(2020) Jessica A Keller et al.   Marine and Coastal Fisheries

dsmextra: Extrapolation assessment tools for density surface models

(2020) Phil J. Bouchet et al.   Methods in Ecology and Evolution

Hyperparameters and tuning strategies for random forest

(2019) Philipp Probst et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

Translating Marine Animal Tracking Data into Conservation Policy and Management

(2019) Graeme C. Hays et al.   TRENDS IN ECOLOGY & EVOLUTION

Preparing for the future: integrating spatial ecology into ecosystem-based management

(2019) Susan K Lowerre-Barbieri et al.   ICES JOURNAL OF MARINE SCIENCE

Interspecific interactions, movement patterns and habitat use in a diverse coastal shark assemblage

(2019) Michelle R. Heupel et al.   MARINE BIOLOGY

Home range and spawning migration patterns of queen triggerfish Balistes vetula in St. Croix, US Virgin Islands

(2019) DR Bryan et al.   MARINE ECOLOGY PROGRESS SERIES

Conducting and interpreting fish telemetry studies: considerations for researchers and resource managers

(2019) Jacob W. Brownscombe et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Ecosystem Function and Services of Aquatic Predators in the Anthropocene

(2019) Neil Hammerschlag et al.   TRENDS IN ECOLOGY & EVOLUTION

Collaboration and engagement produce more actionable science: quantitatively analyzing uptake of fish tracking studies

(2019) Vivian M. Nguyen et al.   ECOLOGICAL APPLICATIONS

Hyperparameter tuning and performance assessment of statistical and machine-learning algorithms using spatial data

(2019) Patrick Schratz et al.   ECOLOGICAL MODELLING

A practical method to account for variation in detection range in acoustic telemetry arrays to accurately quantify the spatial ecology of aquatic animals

(2019) Jacob W. Brownscombe et al.   Methods in Ecology and Evolution

Juvenile hawksbill residency and habitat use within a Caribbean marine protected area

(2019) TH Selby et al.   Endangered Species Research

Movements, connectivity, and space use of immature green turtles within coastal habitats of the Culebra Archipelago, Puerto Rico: implications for conservation

(2019) LP Griffin et al.   Endangered Species Research

Coarse- and fine-scale acoustic telemetry elucidates movement patterns and temporal variability in individual territories for a key coastal mesopredator

(2019) Sarah L. Becker et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Network analysis reveals multispecies spatial associations in the shark community of a Caribbean marine protected area

(2019) GA Casselberry et al.   MARINE ECOLOGY PROGRESS SERIES

Refuges and risks: Evaluating the benefits of an expanded MPA network for mobile apex predators

(2018) Ryan Daly et al.   DIVERSITY AND DISTRIBUTIONS

Spawning migration movements of Mutton Snapper in Tortugas, Florida: Spatial dynamics within a marine reserve network

(2018) Michael W. Feeley et al.   FISHERIES RESEARCH

Estimating the distribution and relative density of satellite-tagged loggerhead sea turtles using geostatistical mixed effects models

(2018) MV Winton et al.   MARINE ECOLOGY PROGRESS SERIES

Evaluation of acoustic telemetry grids for determining aquatic animal movement and survival

(2018) Richard T. Kraus et al.   Methods in Ecology and Evolution

A machine-learning approach for extending classical wildlife resource selection analyses

(2018) Kevin T. Shoemaker et al.   Ecology and Evolution

Estimating the distribution and relative density of satellite-tagged loggerhead sea turtles using geostatistical mixed effects models

(2018) MV Winton et al.   MARINE ECOLOGY PROGRESS SERIES

A spatial point process model to estimate individual centres of activity from passive acoustic telemetry data

(2018) Megan V. Winton et al.   Methods in Ecology and Evolution

Random forest as a generic framework for predictive modeling of spatial and spatio-temporal variables

(2018) Tomislav Hengl et al.   PeerJ

Feeding habits of the tiger shark, Galeocerdo cuvier, in the northwest Atlantic Ocean and Gulf of Mexico

(2017) Alexandra C. Aines et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Daily temperature experience and selection by adfluvial bull trout (Salvelinus confluentus)

(2017) L. F. G. Gutowsky et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Measuring niche overlap between co-occurring Plectropomus spp. using acoustic telemetry and stable isotopes

(2017) J. K. Matley et al.   MARINE AND FRESHWATER RESEARCH

Species diversity, abundance, biomass, size and trophic structure of fish on coral reefs in relation to shark abundance

(2017) SC Barley et al.   MARINE ECOLOGY PROGRESS SERIES

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study

(2017) Katherine A. Zeller et al.   PLoS One

Relative Selection Strength: Quantifying effect size in habitat- and step-selection inference

(2017) Tal Avgar et al.   Ecology and Evolution

Species diversity, abundance, biomass, size and trophic structure of fish on coral reefs in relation to shark abundance

(2017) SC Barley et al.   MARINE ECOLOGY PROGRESS SERIES

Diet and condition of mesopredators on coral reefs in relation to shark abundance

(2017) Shanta C. Barley et al.   PLoS One

Using reef fish movement to inform marine reserve design

(2016) Rebecca Weeks et al.   JOURNAL OF APPLIED ECOLOGY

Temporal plasticity in thermal-habitat selection of burbotLota lotaa diel-migrating winter-specialist

(2016) P. M. Harrison et al.   JOURNAL OF FISH BIOLOGY

Ontogeny of head and caudal fin shape of an apex marine predator: The tiger shark (Galeocerdo cuvier)

(2016) Amy L. Fu et al.   JOURNAL OF MORPHOLOGY

Multi-scale habitat selection modeling: a review and outlook

(2016) Kevin McGarigal et al.   LANDSCAPE ECOLOGY

Movement patterns of two carangid species in inshore habitats characterised using network analysis

(2016) EJI Lédée et al.   MARINE ECOLOGY PROGRESS SERIES

Influence of detection history and analytic tools on quantifying spatial ecology of a predatory fish in a marine protected area

(2016) SL Becker et al.   MARINE ECOLOGY PROGRESS SERIES

Acoustic telemetry and network analysis reveal the space use of multiple reef predators and enhance marine protected area design

(2016) James S. E. Lea et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Key Questions in Marine Megafauna Movement Ecology

(2016) Graeme C. Hays et al.   TRENDS IN ECOLOGY & EVOLUTION

Effective Coverage Targets for Ocean Protection

(2016) Bethan C. O'Leary et al.   Conservation Letters

Can you hear me now? Range-testing a submerged passive acoustic receiver array in a Caribbean coral reef habitat

(2016) Thomas H. Selby et al.   Ecology and Evolution

Movement patterns of two carangid species in inshore habitats characterised using network analysis

(2016) EJI Lédée et al.   MARINE ECOLOGY PROGRESS SERIES

Influence of detection history and analytic tools on quantifying spatial ecology of a predatory fish in a marine protected area

(2016) SL Becker et al.   MARINE ECOLOGY PROGRESS SERIES

Reef shark movements relative to a coastal marine protected area

(2016) C.W. Speed et al.   Regional Studies in Marine Science

Comparative Use of a Caribbean Mesophotic Coral Ecosystem and Association with Fish Spawning Aggregations by Three Species of Shark

(2016) Alexandria E. Pickard et al.   PLoS One

Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator

(2015) C. H. Fleming et al.   ECOLOGY

Forecasted coral reef decline in marine biodiversity hotspots under climate change

(2015) Patrice Descombes et al.   GLOBAL CHANGE BIOLOGY

Temperature-associated habitat selection in a cold-water marine fish

(2015) Carla Freitas et al.   JOURNAL OF ANIMAL ECOLOGY

Novel observations of an opportunistic predation event by four apex predatory sharks

(2015) O.R. O’Shea et al.   MARINE AND FRESHWATER BEHAVIOUR AND PHYSIOLOGY

The spatiotemporal dynamics of habitat use by blacktip (Carcharhinus limbatus) and lemon (Negaprion brevirostris) sharks in nurseries of St. John, United States Virgin Islands

(2015) Bryan Legare et al.   MARINE BIOLOGY

Making waves: The science and politics of ocean protection

(2015) J. Lubchenco et al.   SCIENCE

Aquatic animal telemetry: A panoramic window into the underwater world

(2015) N. E. Hussey et al.   SCIENCE

Here be dragons: a tool for quantifying novelty due to covariate range and correlation change when projecting species distribution models

(2014) Mohsen B. Mesgaran et al.   DIVERSITY AND DISTRIBUTIONS

Important marine habitat off east Antarctica revealed by two decades of multi-species predator tracking

(2014) Ben Raymond et al.   ECOGRAPHY

Making connections in aquatic ecosystems with acoustic telemetry monitoring

(2014) Michael R Donaldson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Harnessing the power of big data: infusing the scientific method with machine learning to transform ecology

(2014) Debra P. C. Peters et al.   Ecosphere

Latent impacts: the role of historical human activity in coastal habitat loss

(2013) Tyler C Coverdale et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Estimating animal resource selection from telemetry data using point process models

(2013) Devin S. Johnson et al.   JOURNAL OF ANIMAL ECOLOGY

Selection, use, choice and occupancy: clarifying concepts in resource selection studies

(2013) Subhash R. Lele et al.   JOURNAL OF ANIMAL ECOLOGY

Sizing up the ecological role of sharks as predators

(2013) MR Heupel et al.   MARINE ECOLOGY PROGRESS SERIES

A review of detection range testing in aquatic passive acoustic telemetry studies

(2013) S. T. Kessel et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Environmental influence on transmitter detection probability in biotelemetry: developing a general model of acoustic transmission

(2013) Karl Ø. Gjelland et al.   Methods in Ecology and Evolution

Evaluating marine protected areas for the conservation of tropical coastal sharks

(2012) Danielle M. Knip et al.   BIOLOGICAL CONSERVATION

Humans alter habitat selection of birds on ocean-exposed sandy beaches

(2012) Justin J. Meager et al.   DIVERSITY AND DISTRIBUTIONS

Mixed-effects random forest for clustered data

(2012) Ahlem Hajjem et al.   JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION

V-Track: software for analysing and visualising animal movement from acoustic telemetry detections

(2012) Hamish A. Campbell et al.   MARINE AND FRESHWATER RESEARCH

Selecting pseudo-absences for species distribution models: how, where and how many?

(2012) Morgane Barbet-Massin et al.   Methods in Ecology and Evolution

A general and simple method for obtainingR2from generalized linear mixed-effects models

(2012) Shinichi Nakagawa et al.   Methods in Ecology and Evolution

Testing a new acoustic telemetry technique to quantify long-term, fine-scale movements of aquatic animals

(2011) Mario Espinoza et al.   FISHERIES RESEARCH

Determinants of reproductive success in dominant pairs of clownfish: a boosted regression tree analysis

(2011) Peter M. Buston et al.   JOURNAL OF ANIMAL ECOLOGY

Estimating utilization distributions with kernel versus local convex hull methods

(2011) Nathanael I. Lichti et al.   JOURNAL OF WILDLIFE MANAGEMENT

Correlation and studies of habitat selection: problem, red herring or opportunity?

(2010) J. Fieberg et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temporal scales, trade-offs, and functional responses in red deer habitat selection

(2009) Inger Maren Rivrud Godvik et al.   ECOLOGY

Cascading top-down effects of changing oceanic predator abundances

(2009) Julia K. Baum et al.   JOURNAL OF ANIMAL ECOLOGY

Generalized estimating equations and generalized linear mixed-effects models for modelling resource selection

(2009) Nicola Koper et al.   JOURNAL OF APPLIED ECOLOGY

Use of resource selection functions to identify conservation corridors

(2009) Cheryl-Lesley B. Chetkiewicz et al.   JOURNAL OF APPLIED ECOLOGY

Science-based and stakeholder-driven marine protected area network planning: A successful case study from north central California

(2009) Mary Gleason et al.   OCEAN & COASTAL MANAGEMENT

Predictive learning via rule ensembles

(2008) Jerome H. Friedman et al.   Annals of Applied Statistics

Forks in the Road: Choices in Procedures for Designing Wildland Linkages

(2008) PAUL BEIER et al.   CONSERVATION BIOLOGY

Estimating space-use and habitat preference from wildlife telemetry data

(2008) Geert Aarts et al.   ECOGRAPHY

A working guide to boosted regression trees

(2008) J. Elith et al.   JOURNAL OF ANIMAL ECOLOGY

Design of marine protected areas in a human-dominated seascape

(2008) S Fraschetti et al.   MARINE ECOLOGY PROGRESS SERIES

Machine Learning Methods Without Tears: A Primer for Ecologists

(2008) Julian D. Olden et al.   QUARTERLY REVIEW OF BIOLOGY

Biotelemetry and biologging in endangered species research and animal conservation: relevance to regional, national, and IUCN Red List threat assessments

(2007) SJ Cooke   Endangered Species Research