Sedimentary Ancient DNA (sedaDNA) Reveals Fungal Diversity and Environmental Drivers of Community Changes throughout the Holocene in the Present Boreal Lake Lielais Svētiņu (Eastern Latvia)

Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene

(2021) Eric Capo et al.   Microorganisms

Intragenomic polymorphisms in the ITS region of high-quality genomes of the Hypoxylaceae (Xylariales, Ascomycota)

(2020) Marc Stadler et al.   MYCOLOGICAL PROGRESS

Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe

(2020) Leho Tedersoo et al.   Frontiers in Microbiology

Fungal diversity in the deep-sea hadal sediments of the Yap Trench by cultivation and high throughput sequencing methods based on ITS rRNA gene

(2019) Wei Xu et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Environmental DNA in lake sediment reveals biogeography of native genetic diversity

(2019) Hedin T Nelson‐Chorney et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Integrating fire-scar, charcoal and fungal spore data to study fire events in the boreal forest of northern Europe

(2019) Normunds Stivrins et al.   HOLOCENE

The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

(2019) Stijn De Schepper et al.   ISME Journal

A meta-analysis of global fungal distribution reveals climate-driven patterns

(2019) Tomáš Větrovský et al.   Nature Communications

New insights on lake sediment DNA from the catchment: importance of taphonomic and analytical issues on the record quality

(2019) C. Giguet-Covex et al.   Scientific Reports

DNA from lake sediments reveals long-term ecosystem changes after a biological invasion

(2018) Gentile Francesco Ficetola et al.   Science Advances

From microbial eukaryotes to metazoan vertebrates: Wide spectrum paleo-diversity in sedimentary ancient DNA over the last ~14,500 years

(2018) Veljo Kisand et al.   Geobiology

Holocene floristic diversity and richness in northeast Norway revealed by sedimentary ancient DNA (sed aDNA) and pollen

(2018) Charlotte L. Clarke et al.   BOREAS

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

(2017) Thijs Frenken et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal communities in Scandinavian lakes along a longitudinal gradient

(2017) Maryia Khomich et al.   Fungal Ecology

Distinct sensitivity of fungal freshwater guilds to water quality

(2017) Oliver Röhl et al.   MYCOLOGICAL PROGRESS

Host preference and network properties in biotrophic plant-fungal associations

(2017) Sergei Põlme et al.   NEW PHYTOLOGIST

Broadleaf deciduous forest counterbalanced the direct effect of climate on Holocene fire regime in hemiboreal/boreal region (NE Europe)

(2017) Angelica Feurdean et al.   QUATERNARY SCIENCE REVIEWS

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

(2017) Tobias Guldberg Frøslev et al.   Nature Communications

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi

(2016) Hans-Peter Grossart et al.   Fungal Ecology

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

(2016) Eric Capo et al.   MOLECULAR ECOLOGY

Ecological and human land-use indicator value of fungal spore morphotypes and assemblages

(2016) Elise Doyen et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

codyn: Anrpackage of community dynamics metrics

(2016) Lauren M. Hallett et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany)

(2016) Christian Wurzbacher et al.   MycoKeys

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change

(2015) Inger Greve Alsos et al.   HOLOCENE

Phytoplankton response to the environmental and climatic variability in a temperate lake over the last 14,500 years in eastern Latvia

(2015) N. Stivrins et al.   JOURNAL OF PALEOLIMNOLOGY

Novel basal, fungal lineages from freshwater phytoplankton and lake samples

(2015) Seiji Ishida et al.   Environmental Microbiology Reports

Importance of Saprotrophic Freshwater Fungi for Pollen Degradation

(2014) Christian Wurzbacher et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Mycoloop: chytrids in aquatic food webs

(2014) Maiko Kagami et al.   Frontiers in Microbiology

Species Richness and the Temporal Stability of Biomass Production: A New Analysis of Recent Biodiversity Experiments

(2013) Kevin Gross et al.   AMERICAN NATURALIST

Bacterial and Fungal Diversity of Quaternary Cave Sediment Deposits

(2013) Laura Epure et al.   GEOMICROBIOLOGY JOURNAL

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost

(2012) Eva Bellemain et al.   ENVIRONMENTAL MICROBIOLOGY

Ancient fungi in Antarctic permafrost environments

(2012) Galina Kochkina et al.   FEMS MICROBIOLOGY ECOLOGY

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lateglacial vegetation dynamics in the eastern Baltic region between 14,500 and 11,400calyrBP: A complete record since the Bølling (GI-1e) to the Holocene

(2012) Siim Veski et al.   QUATERNARY SCIENCE REVIEWS

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology

(2010) MARTIN UNTERSEHER et al.   MOLECULAR ECOLOGY

The ecology of chytrids in aquatic ecosystems: roles in food web dynamics

(2008) Frank H. Gleason et al.   Fungal Biology Reviews