Phylogenomic Evidence of Reinfection and Persistence of SARS-CoV-2: First Report from Colombia

A first probable case of SARS-CoV-2 reinfection in Colombia

(2021) Whilken Novoa et al.   Annals of Clinical Microbiology and Antimicrobials

What we know about covid-19 reinfection so far

(2021) Chris Stokel-Walker   BMJ-British Medical Journal

Severe reinfection with South African SARS-CoV-2 variant 501Y.V2: A case report

(2021) Noémie Zucman et al.   CLINICAL INFECTIOUS DISEASES

Characterizing SARS-CoV-2 genome diversity circulating in South American countries: signatures of potentially emergent lineages?

(2021) Marina Muñoz et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

SARS-CoV-2 persistence is associated with antigen-specific CD8 T-cell responses

(2021) Line K. Vibholm et al.   EBioMedicine

SARS-CoV-2 evolution and vaccines: cause for concern?

(2021) Thomas C Williams et al.   Lancet Respiratory Medicine

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility

(2020) Melissa M. Arons et al.   NEW ENGLAND JOURNAL OF MEDICINE

The arrival and spread of SARS‐CoV‐2 in Colombia

(2020) Juan David Ramírez et al.   JOURNAL OF MEDICAL VIROLOGY

Evolution and epidemic spread of SARS-CoV-2 in Brazil

(2020) Darlan S. Candido et al.   SCIENCE

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm

(2020) Luotong Wang et al.   Frontiers in Genetics

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

(2020) Andrew Rambaut et al.   Nature Microbiology

Reinfection of SARS-CoV-2 in an immunocompromised patient: a case report

(2020) Marlies Mulder et al.   CLINICAL INFECTIOUS DISEASES

Genomic evidence for reinfection with SARS-CoV-2: a case study

(2020) Richard L Tillett et al.   LANCET INFECTIOUS DISEASES

Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection After Recovery from Mild Coronavirus Disease 2019

(2020) Jee-Soo Lee et al.   CLINICAL INFECTIOUS DISEASES

Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host

(2020) Bina Choi et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evaluation on the use of Nanopore sequencing for direct characterization of coronaviruses from respiratory specimens, and a study on emerging missense mutations in partial RdRP gene of SARS-CoV-2

(2020) Wai Sing Chan et al.   Virology Journal

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

(2020) Rowena A. Bull et al.   Nature Communications

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR

(2020) Shuhui Song et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

A case of SARS-CoV-2 reinfection in Ecuador

(2020) Belén Prado-Vivar et al.   LANCET INFECTIOUS DISEASES

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS