Real-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis

Enteral broad-spectrum antibiotics antagonize the effect of fecal microbiota transplantation in preterm pigs

(2021) Anders Brunse et al.   Gut Microbes

Changes in rumen fermentation, bacterial community, and predicted functional pathway in Holstein cows with and without subacute ruminal acidosis during the periparturient period

(2020) Yoshiyuki Tsuchiya et al.   JOURNAL OF DAIRY SCIENCE

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Dairy Goats Fed Different Rumen Degradable Starch

(2020) Jing Shen et al.   Frontiers in Microbiology

Host–microbiome interactions: the aryl hydrocarbon receptor as a critical node in tryptophan metabolites to brain signaling

(2020) Ning Ma et al.   Gut Microbes

A novel apidaecin Api-PR19 synergizes with the gut microbial community to maintain intestinal health and promote growth performance of broilers

(2020) Shengru Wu et al.   Journal of Animal Science and Biotechnology

Correlations between microbiota with physicochemical properties and volatile flavor components in black glutinous rice wine fermentation

(2020) Chi Zhao et al.   FOOD RESEARCH INTERNATIONAL

Prebiotic supplementation in frail older people affects specific gut microbiota taxa but not global diversity

(2019) Tam T. T. Tran et al.   Microbiome

Dynamic changes in rumen fermentation and bacterial community following rumen fluid transplantation in a sheep model of rumen acidosis: implications for rumen health in ruminants

(2019) Junhua Liu et al.   FASEB JOURNAL

Dietary Energy Level Promotes Rumen Microbial Protein Synthesis by Improving the Energy Productivity of the Ruminal Microbiome

(2019) Zhongyan Lu et al.   Frontiers in Microbiology

Gut microbiota promote the inflammatory response in the pathogenesis of systemic lupus erythematosus

(2019) Yiyangzi Ma et al.   MOLECULAR MEDICINE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

(2019) Jethro S. Johnson et al.   Nature Communications

Thiamine ameliorates inflammation of the ruminal epithelium of Saanen goats suffering from subacute ruminal acidosis

(2019) H. Zhang et al.   JOURNAL OF DAIRY SCIENCE

Echinacoside alleviated LPS-induced cell apoptosis and inflammation in rat intestine epithelial cells by inhibiting the mTOR/STAT3 pathway

(2018) Lei Li et al.   BIOMEDICINE & PHARMACOTHERAPY

Fiber-Mediated Nourishment of Gut Microbiota Protects against Diet-Induced Obesity by Restoring IL-22-Mediated Colonic Health

(2018) Jun Zou et al.   Cell Host & Microbe

Interactions Between Diet and the Intestinal Microbiota Alter Intestinal Permeability and Colitis Severity in Mice

(2018) Sean R. Llewellyn et al.   GASTROENTEROLOGY

Symposium review: Host–rumen microbe interactions may be leveraged to improve the productivity of dairy cows

(2018) D.M. Bickhart et al.   JOURNAL OF DAIRY SCIENCE

Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria

(2018) Inês S. Pais et al.   PLOS BIOLOGY

The Presence or Absence of Intestinal Microbiota Affects Lipid Deposition and Related Genes Expression in Zebrafish (Danio rerio)

(2018) Yi Sheng et al.   Frontiers in Microbiology

Standardized Preparation for Fecal Microbiota Transplantation in Pigs

(2018) Jun Hu et al.   Frontiers in Microbiology

Review: Enhancing gastrointestinal health in dairy cows

(2018) J. C. Plaizier et al.   Animal

A Microbiota-Derived Bacteriocin Targets the Host to Confer Diarrhea Resistance in Early-Weaned Piglets

(2018) Jun Hu et al.   Cell Host & Microbe

Characterization and comparative analysis of six complete mitochondrial genomes from ectomycorrhizal fungi of the Lactarius genus and phylogenetic analysis of the Agaricomycetes

(2018) Qiang Li et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Cow-to-mouse fecal transplantations suggest intestinal microbiome as one cause of mastitis

(2018) Chen Ma et al.   Microbiome

Gut microbiome influences efficacy of PD-1–based immunotherapy against epithelial tumors

(2017) Bertrand Routy et al.   SCIENCE

Rumen Bacteria Communities and Performances of Fattening Lambs with a Lower or Greater Subacute Ruminal Acidosis Risk

(2017) Fei Li et al.   Frontiers in Microbiology

Intestinal microbiota could transfer host Gut characteristics from pigs to mice

(2016) H. Diao et al.   BMC MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter

(2015) Jürg B Logue et al.   ISME Journal

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Effects of dietary effective fiber to rumen degradable starch ratios on the risk of sub-acute ruminal acidosis and rumen content fatty acids composition in dairy goat

(2014) F. Li et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Subacute ruminal acidosis challenge changed in situ degradability of feedstuffs in dairy goats

(2014) Fei Li et al.   JOURNAL OF DAIRY SCIENCE

The gut microbiota and obesity: from correlation to causality

(2013) Liping Zhao   NATURE REVIEWS MICROBIOLOGY

Gut Microbiota Composition and Activity in Relation to Host Metabolic Phenotype and Disease Risk

(2012) Elaine Holmes et al.   Cell Metabolism

454 Pyrosequencing Reveals a Shift in Fecal Microbiota of Healthy Adult Men Consuming Polydextrose or Soluble Corn Fiber

(2012) Seema Hooda et al.   JOURNAL OF NUTRITION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

RUMINANT NUTRITION SYMPOSIUM: Role of fermentation acid absorption in the regulation of ruminal pH12

(2010) J. R. Aschenbach et al.   JOURNAL OF ANIMAL SCIENCE

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

(2009) E. Khafipour et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of increasing amounts of dietary wheat on performance and ruminal fermentation of Holstein cows

(2009) L. Doepel et al.   JOURNAL OF DAIRY SCIENCE

Relationships between rumen lipopolysaccharide and mediators of inflammatory response with milk fat production and efficiency in dairy cows

(2009) Q. Zebeli et al.   JOURNAL OF DAIRY SCIENCE