Astrocytes and neurons share region-specific transcriptional signatures that confer regional identity to neuronal reprogramming

Identification of region-specific astrocyte subtypes at single cell resolution

(2020) Mykhailo Y. Batiuk et al.   Nature Communications

Pharmacologic fibroblast reprogramming into photoreceptors restores vision

(2020) Biraj Mahato et al.   NATURE

Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map

(2020) Omer Ali Bayraktar et al.   NATURE NEUROSCIENCE

Region-Specific Transcriptional Control of Astrocyte Function Oversees Local Circuit Activities

(2020) Anna Yu-Szu Huang et al.   NEURON

Reversing a model of Parkinson’s disease with in situ converted nigral neurons

(2020) Hao Qian et al.   NATURE

Onset of differentiation is post-transcriptionally controlled in adult neural stem cells

(2019) Avni Baser et al.   NATURE

Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling

(2019) Qiuxia Guo et al.   DEVELOPMENT

Prenatal activity from thalamic neurons governs the emergence of functional cortical maps in mice

(2019) Noelia Antón-Bolaños et al.   SCIENCE

Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex

(2019) L. Telley et al.   SCIENCE

The Emerging Nature of Astrocyte Diversity

(2019) Baljit S. Khakh et al.   Annual Review of Neuroscience

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Inducing Different Neuronal Subtypes from Astrocytes in the Injured Mouse Cerebral Cortex

(2019) Nicola Mattugini et al.   NEURON

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Early emergence of cortical interneuron diversity in the mouse embryo

(2018) Da Mi et al.   SCIENCE

In vivo clonal analysis reveals spatiotemporal regulation of thalamic nucleogenesis

(2018) Samuel Z. H. Wong et al.   PLOS BIOLOGY

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Developmental diversification of cortical inhibitory interneurons

(2018) Christian Mayer et al.   NATURE

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

(2018) Anqi Zhu et al.   BIOINFORMATICS

Nervous System Regionalization Entails Axial Allocation before Neural Differentiation

(2018) Vicki Metzis et al.   CELL

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Ontogenetic establishment of order-specific nuclear organization in the mammalian thalamus

(2017) Wei Shi et al.   NATURE NEUROSCIENCE

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

(2017) Tomasz J. Nowakowski et al.   SCIENCE

Prenatal thalamic waves regulate cortical area size prior to sensory processing

(2017) Verónica Moreno-Juan et al.   Nature Communications

Loss of Kdm5c Causes Spurious Transcription and Prevents the Fine-Tuning of Activity-Regulated Enhancers in Neurons

(2017) Marilyn Scandaglia et al.   Cell Reports

Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming

(2016) Sergio Gascón et al.   Cell Stem Cell

UbC-StarTrack, a clonal method to target the entire progeny of individual progenitors

(2016) María Figueres-Oñate et al.   Scientific Reports

Generating Neuronal Diversity in the Mammalian Cerebral Cortex

(2015) Simona Lodato et al.   Annual Review of Cell and Developmental Biology

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Striatal astrocytes produce neuroblasts in an excitotoxic model of Huntington's disease

(2015) G. Nato et al.   DEVELOPMENT

Gbx2 is essential for maintaining thalamic neuron identity and repressing habenular characters in the developing thalamus

(2015) Chatterjee Mallika et al.   DEVELOPMENTAL BIOLOGY

DeCoN: Genome-wide Analysis of In Vivo Transcriptional Dynamics during Pyramidal Neuron Fate Selection in Neocortex

(2015) Bradley J. Molyneaux et al.   NEURON

Astrocyte-encoded positional cues maintain sensorimotor circuit integrity

(2014) Anna V. Molofsky et al.   NATURE

Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons

(2014) Simona Lodato et al.   NATURE NEUROSCIENCE

A latent neurogenic program in astrocytes regulated by Notch signaling in the mouse

(2014) J. P. Magnusson et al.   SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Molecular logic of neocortical projection neuron specification, development and diversity

(2013) Luciano Custo Greig et al.   NATURE REVIEWS NEUROSCIENCE

Clonal Identity Determines Astrocyte Cortical Heterogeneity

(2012) Jorge García-Marqués et al.   CEREBRAL CORTEX

 -Catenin signaling specifies progenitor cell identity in parallel with Shh signaling in the developing mammalian thalamus

(2012) K. K. Bluske et al.   DEVELOPMENT

Local generation of glia is a major astrocyte source in postnatal cortex

(2012) Woo-Ping Ge et al.   NATURE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex

(2011) Christophe Heinrich et al.   Nature Protocols

Developmental genetics of vertebrate glial–cell specification

(2010) David H. Rowitch et al.   NATURE

Epigenetic memory in induced pluripotent stem cells

(2010) K. Kim et al.   NATURE

Epigenetic control of neural precursor cell fate during development

(2010) Yusuke Hirabayashi et al.   NATURE REVIEWS NEUROSCIENCE

Transcription factor Gbx2 acts cell-nonautonomously to regulate the formation of lineage-restriction boundaries of the thalamus

(2009) L. Chen et al.   DEVELOPMENT

Polycomb Limits the Neurogenic Competence of Neural Precursor Cells to Promote Astrogenic Fate Transition

(2009) Yusuke Hirabayashi et al.   NEURON

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Identification of Positionally Distinct Astrocyte Subtypes whose Identities Are Specified by a Homeodomain Code

(2008) Christian Hochstim et al.   CELL

A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function

(2008) J. D. Cahoy et al.   JOURNAL OF NEUROSCIENCE