Plastome analysis unveils Inverted Repeat (IR) expansion and positive selection in Sea Lavenders (Limonium, Plumbaginaceae, Limonioideae, Limonieae)

Plastome data provide insights into intra and interspecific diversity and ndh gene loss in Capparis (Capparaceae)

(2020) SATISH MAURYA et al.   Phytotaxa

The complete chloroplast genome sequence of Limonium sinense (Plumbaginaceae)

(2020) Jianfang Li et al.   Mitochondrial DNA Part B-Resources

The SNARE protein LbSYP61 participates in salt secretion in Limonium bicolor

(2020) Chaoxia Lu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

EasyCodeML: A visual tool for analysis of selection using CodeML

(2019) Fangluan Gao et al.   Ecology and Evolution

Plastid phylogenomic insights into the evolution of Caryophyllales

(2019) Gang Yao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Understanding evolution in Poales: Insights from Eriocaulaceae plastome

(2019) Ashwini M. Darshetkar et al.   PLoS One

The complete chloroplast genome of the Jerusalem artichoke (Helianthus tuberosus L.) and an adaptive evolutionary analysis of the ycf2 gene

(2019) Qiwen Zhong et al.   PeerJ

Complete plastome sequence of Limonium aureum, a medicinal and ornamental species in China

(2019) Xiaoyin Zhang et al.   Mitochondrial DNA Part B-Resources

From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales

(2018) Joseph F. Walker et al.   AMERICAN JOURNAL OF BOTANY

IRscope: an online program to visualize the junction sites of chloroplast genomes

(2018) Ali Amiryousefi et al.   BIOINFORMATICS

Positive Selection Driving Cytoplasmic Genome Evolution of the Medicinally Important Ginseng Plant Genus Panax

(2018) Peng Jiang et al.   Frontiers in Plant Science

Practical considerations for plant phylogenomics

(2018) Michael R. McKain et al.   Applications in Plant Sciences

An expanded molecular phylogeny of Plumbaginaceae, with emphasis on Limonium (sea lavenders): Taxonomic implications and biogeographic considerations

(2018) Konstantina Koutroumpa et al.   Ecology and Evolution

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis

(2017) Zachariah Gompert et al.   Molecular Ecology Resources

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Gene-Tree Reconciliation with MUL-Trees to Resolve Polyploidy Events

(2017) W. C. Thomas Gregg et al.   SYSTEMATIC BIOLOGY

Phylogenetic relationships of Limonium (Plumbaginaceae) inferred from multiple chloroplast and nuclear loci

(2017) Maryam Malekmohammadi et al.   TAXON

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

NOVOPlasty:de novoassembly of organelle genomes from whole genome data

(2016) Nicolas Dierckxsens et al.   NUCLEIC ACIDS RESEARCH

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Phylogeography and modes of reproduction in diploid and tetraploid halophytes ofLimoniumspecies (Plumbaginaceae): evidence for a pattern of geographical parthenogenesis

(2015) Ana Sofia Róis et al.   ANNALS OF BOTANY

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

(2015) Andan Zhu et al.   NEW PHYTOLOGIST

A taxonomic backbone for the global synthesis of species diversity in the angiosperm orderCaryophyllales

(2015) Patricia Hernández-Ledesma et al.   Willdenowia

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetics of the Irano-Turanian taxa ofLimonium(Plumbaginaceae) based on ITS nrDNA sequences and leaf anatomy provides evidence for species delimitation and relationships of lineages

(2013) Hossein Akhani et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale – A wild ancestor of cultivated buckwheat

(2008) Maria D Logacheva et al.   BMC PLANT BIOLOGY