Human Mitochondrial Control Region and mtGenome: Design and Forensic Validation of NGS Multiplexes, Sequencing and Analytical Software

Impact of DNA degradation on massively parallel sequencing-based autosomal STR, iiSNP, and mitochondrial DNA typing systems

(2019) Elena I. Zavala et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Evaluation of mitogenome sequence concordance, heteroplasmy detection, and haplogrouping in a worldwide lineage study using the Precision ID mtDNA Whole Genome Panel

(2019) Christina Strobl et al.   Forensic Science International-Genetics

Optimizing DNA recovery and forensic typing of degraded blood and dental remains using a specialized extraction method, comprehensive qPCR sample characterization, and massively parallel sequencing

(2019) Patricio Carrasco et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Validation of NGS for mitochondrial DNA casework at the FBI Laboratory

(2019) Michael D. Brandhagen et al.   Forensic Science International-Genetics

Primer3_masker: integrating masking of template sequence with primer design software

(2018) Triinu Kõressaar et al.   BIOINFORMATICS

Developmental validation of a Nextera XT mitogenome Illumina MiSeq sequencing method for high-quality samples

(2018) Michelle A. Peck et al.   Forensic Science International-Genetics

Evaluation of the Precision ID mtDNA Whole Genome Panel on two massively parallel sequencing systems

(2018) August E. Woerner et al.   Forensic Science International-Genetics

Performance evaluation of a mitogenome capture and Illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure

(2017) Charla Marshall et al.   Forensic Science International-Genetics

Characterization of NIST human mitochondrial DNA SRM-2392 and SRM-2392-I standard reference materials by next generation sequencing

(2017) Sarah Riman et al.   Forensic Science International-Genetics

A performance evaluation of Nextera XT and KAPA HyperPlus for rapid Illumina library preparation of long-range mitogenome amplicons

(2017) Joseph D. Ring et al.   Forensic Science International-Genetics

Developmental validation of the MiSeq FGx Forensic Genomics System for Targeted Next Generation Sequencing in Forensic DNA Casework and Database Laboratories

(2017) Anne C. Jäger et al.   Forensic Science International-Genetics

Analysis of DNA from post-blast pipe bomb fragments for identification and determination of ancestry

(2017) Esiri Tasker et al.   Forensic Science International-Genetics

Concordance and reproducibility of a next generation mtGenome sequencing method for high-quality samples using the Illumina MiSeq

(2016) Michelle A. Peck et al.   Forensic Science International-Genetics

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor

(2016) Rosanna Clima et al.   NUCLEIC ACIDS RESEARCH

Sequencing the hypervariable regions of human mitochondrial DNA using massively parallel sequencing: Enhanced data acquisition for DNA samples encountered in forensic testing

(2015) Carey Davis et al.   Legal Medicine

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Sequencing the hypervariable regions of human mitochondrial DNA using massively parallel sequencing: Enhanced data acquisition for DNA samples encountered in forensic testing

(2015) Carey Davis et al.   Legal Medicine

Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling

(2014) Stephen J. Salipante et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DNA Commission of the International Society for Forensic Genetics: Revised and extended guidelines for mitochondrial DNA typing

(2014) W. Parson et al.   Forensic Science International-Genetics

High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq

(2014) Jonathan L. King et al.   Forensic Science International-Genetics

Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq

(2014) Jennifer A. McElhoe et al.   Forensic Science International-Genetics

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM)

(2013) Walther Parson et al.   Forensic Science International-Genetics

Domain enhanced lookup time accelerated BLAST

(2012) Grzegorz M Boratyn et al.   Biology Direct

Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II.

(2012) John Archer et al.   BMC BIOINFORMATICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Genetic Identification of Missing Persons: DNA Analysis of Human Remains and Compromised Samples

(2012) M.J. Alvarez-Cubero et al.   PATHOBIOLOGY

Complete Mitochondrial Genome Sequencing Reveals Novel Haplotypes in a Polynesian Population

(2012) Miles Benton et al.   PLoS One

Next-Generation Sequencing of Human Mitochondrial Reference Genomes Uncovers High Heteroplasmy Frequency

(2012) Maria Ximena Sosa et al.   PLoS Computational Biology

The interpretation of lineage markers in forensic DNA testing

(2011) J.S. Buckleton et al.   Forensic Science International-Genetics

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

The RHNumtS compilation: Features and bioinformatics approaches to locate and quantify Human NumtS

(2009) Daniela Lascaro et al.   BMC GENOMICS

Case report: Identification of skeletal remains using short-amplicon marker analysis of severely degraded DNA extracted from a decomposed and charred femur

(2008) M. Fondevila et al.   Forensic Science International-Genetics

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE