Fungal community response to long‐term soil warming with potential implications for soil carbon dynamics

Can we use environmental DNA as holotypes?

(2018) Sinang Hongsanan et al.   FUNGAL DIVERSITY

Fungal Biodiversity and Their Role in Soil Health

(2018) Magdalena Frąc et al.   Frontiers in Microbiology

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

(2018) Robert Lücking et al.   IMA Fungus

Protax -fungi: a web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences

(2018) Kessy Abarenkov et al.   NEW PHYTOLOGIST

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Soil microbial respiration adapts to ambient temperature in global drylands

(2018) Marina Dacal et al.   Nature Ecology & Evolution

Tree seedling responses to multiple environmental stresses: Interactive effects of soil warming, nitrogen fertilization, and plant invasion

(2017) J.A. Wheeler et al.   FOREST ECOLOGY AND MANAGEMENT

Effect of Simulated Climate Warming on the Ectomycorrhizal Fungal Community of Boreal and Temperate Host Species Growing Near Their Shared Ecotonal Range Limits

(2017) Joanna Mucha et al.   MICROBIAL ECOLOGY

Experimental soil warming shifts the fungal community composition at the alpine treeline

(2017) Emily F. Solly et al.   NEW PHYTOLOGIST

Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world

(2017) J. M. Melillo et al.   SCIENCE

Changes in substrate availability drive carbon cycle response to chronic warming

(2017) Grace Pold et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbes and their response to experimental warming over time: A meta-analysis of field studies

(2017) A.L. Romero-Olivares et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils

(2016) Grace Pold et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Belowground carbon flux links biogeochemical cycles and resource-use efficiency at the global scale

(2016) Allison L. Gill et al.   ECOLOGY LETTERS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Ectomycorrhizal fungal response to warming is linked to poor host performance at the boreal-temperate ecotone

(2016) Christopher W. Fernandez et al.   GLOBAL CHANGE BIOLOGY

Experimental warming alters potential function of the fungal community in boreal forest

(2016) Kathleen K. Treseder et al.   GLOBAL CHANGE BIOLOGY

Temperature response of soil respiration largely unaltered with experimental warming

(2016) Joanna C. Carey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Top 50 most wanted fungi

(2016) R. Henrik Nilsson et al.   MycoKeys

Fungal Communities Respond to Long-Term CO2Elevation by Community Reassembly

(2015) Qichao Tu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Convergent ecosystem responses to 23-year ambient and manipulated warming link advancing snowmelt and shrub encroachment to transient and long-term climate-soil carbon feedback

(2015) John Harte et al.   GLOBAL CHANGE BIOLOGY

Long-term experimental warming alters community composition of ascomycetes in Alaskan moist and dry arctic tundra

(2015) Tatiana A. Semenova et al.   MOLECULAR ECOLOGY

Soil microbial communities vary as much over time as with chronic warming and nitrogen additions

(2015) Alexandra R. Contosta et al.   SOIL BIOLOGY & BIOCHEMISTRY

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Geographic range predicts photosynthetic and growth response to warming in co-occurring tree species

(2015) Peter B. Reich et al.   Nature Climate Change

Direct and indirect effects of climate change on soil microbial and soil microbial-plant interactions: What lies ahead?

(2015) Aimée T. Classen et al.   Ecosphere

Two decades of warming increases diversity of a potentially lignolytic bacterial community

(2015) Grace Pold et al.   Frontiers in Microbiology

Microbial lipid and amino sugar responses to long-term simulated global environmental changes in a California annual grassland

(2015) Chao Liang et al.   Frontiers in Microbiology

Long-term forest soil warming alters microbial communities in temperate forest soils

(2015) Kristen M. DeAngelis et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

(2014) Colin Averill et al.   NATURE

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Plant community feedbacks and long-term ecosystem responses to multi-factored global change

(2014) J. A. Langley et al.   AoB Plants

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Fungi at a Small Scale: Spatial Zonation of Fungal Assemblages around Single Trees

(2013) Sara Branco et al.   PLoS One

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Thermal adaptation of decomposer communities in warming soils

(2013) Mark A. Bradford   Frontiers in Microbiology

Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground

(2013) Leho Tedersoo et al.   Fungal Biology Reviews

Climate Change, Aboveground-Belowground Interactions, and Species' Range Shifts

(2012) Wim H. Van der Putten   Annual Review of Ecology Evolution and Systematics

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Long-term warming alters the composition of Arctic soil microbial communities

(2012) Julie R. Deslippe et al.   FEMS MICROBIOLOGY ECOLOGY

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

A novel statistical method for classifying habitat generalists and specialists

(2011) Robin L. Chazdon et al.   ECOLOGY

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

(2011) R. Henrik Nilsson et al.   NEW PHYTOLOGIST

Management intensity alters decomposition via biological pathways

(2010) Kyle Wickings et al.   BIOGEOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Susceptibility of ectomycorrhizal fungi to soil heating

(2010) Tabea Kipfer et al.   Fungal Biology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

The influence of microbial communities, management, and soil texture on soil organic matter chemistry

(2009) A. Stuart Grandy et al.   GEODERMA

Treeline shifts in the Ural mountains affect soil organic matter dynamics

(2009) ADRIAN KAMMER et al.   GLOBAL CHANGE BIOLOGY

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Climate warming will reduce growth and survival of Scots pine except in the far north

(2008) P. B. Reich et al.   ECOLOGY LETTERS

Thermal adaptation of soil microbial respiration to elevated temperature

(2008) Mark A. Bradford et al.   ECOLOGY LETTERS

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests

(2008) G. B. Bonan   SCIENCE

Microbial biomass, functional capacity, and community structure after 12 years of soil warming

(2008) S.D. Frey et al.   SOIL BIOLOGY & BIOCHEMISTRY