New Open-Source Tools: Using Bonsai for Behavioral Tracking and Closed-Loop Experiments

TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields

(2021) Tristan Walter et al.   eLife

Real-time, low-latency closed-loop feedback using markerless posture tracking

(2020) Gary A Kane et al.   eLife

Circuit Investigations With Open-Source Miniaturized Microscopes: Past, Present and Future

(2019) Daniel Aharoni et al.   Frontiers in Cellular Neuroscience

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Central amygdala circuits modulate food consumption through a positive-valence mechanism

(2017) Amelia M Douglass et al.   NATURE NEUROSCIENCE

Neuroscience Needs Behavior: Correcting a Reductionist Bias

(2017) John W. Krakauer et al.   NEURON

Validating silicon polytrodes with paired juxtacellular recordings: method and dataset

(2016) Joana P. Neto et al.   JOURNAL OF NEUROPHYSIOLOGY

PhenoWorld: addressing animal welfare in a new paradigm to house and assess rat behaviour

(2016) Magda J Castelhano-Carlos et al.   LABORATORY ANIMALS

Cortical Control: Learning from the Lamprey

(2015) Gonçalo Lopes et al.   CURRENT BIOLOGY

Postmating Circuitry Modulates Salt Taste Processing to Increase Reproductive Output in Drosophila

(2015) Samuel James Walker et al.   CURRENT BIOLOGY

Open source tools for large-scale neuroscience

(2015) Jeremy Freeman   CURRENT OPINION IN NEUROBIOLOGY

Motor Cortex Is Required for Learning but Not for Executing a Motor Skill

(2015) Risa Kawai et al.   NEURON

Development of social behavior in young zebrafish

(2015) Elena Dreosti et al.   Frontiers in Neural Circuits

Bonsai: an event-based framework for processing and controlling data streams

(2015) Gonçalo Lopes et al.   Frontiers in Neuroinformatics

A Place and a Grid in the Sun

(2014) Eric Kandel   CELL

Big behavioral data: psychology, ethology and the foundations of neuroscience

(2014) Alex Gomez-Marin et al.   NATURE NEUROSCIENCE

Cellular Resolution Functional Imaging in Behaving Rats Using Voluntary Head Restraint

(2013) Benjamin B. Scott et al.   NEURON