Identification of genes associated with altered gene expression and m6A profiles during hypoxia using tensor decomposition based unsupervised feature extraction

Application of Tensor Decomposition to Gene Expression of Infection of Mouse Hepatitis Virus Can Identify Critical Human Genes and Efffective Drugs for SARS-CoV-2 Infection

(2021) Y-H. Taguchi et al.   IEEE Journal of Selected Topics in Signal Processing

Tensor decomposition of stimulated monocyte and macrophage gene expression profiles identifies neurodegenerative disease-specific trans-eQTLs

(2020) Satesh Ramdhani et al.   PLoS Genetics

Reprogramming of m6A epitranscriptome is crucial for shaping of transcriptome and proteome in response to hypoxia

(2020) Yan-Jie Wang et al.   RNA Biology

Three-way clustering of multi-tissue multi-individual gene expression data using semi-nonnegative tensor decomposition

(2019) Miaoyan Wang et al.   Annals of Applied Statistics

Differentially Expressed Genes Extracted by the Tensor Robust Principal Component Analysis (TRPCA) Method

(2019) Yue Hu et al.   COMPLEXITY

Tightly Integrated Genomic and Epigenomic Data Mining Using Tensor Decomposition

(2018) Jianwen Fang   BIOINFORMATICS

Hypoxia-Induced Signaling Activation in Neurodegenerative Diseases: Targets for New Therapeutic Strategies

(2018) Niraj Kumar Jha et al.   JOURNAL OF ALZHEIMERS DISEASE

Hypoxia-induced inhibition of the endocannabinoid system in glioblastoma cells

(2017) Naotoshi Sugimoto et al.   ONCOLOGY REPORTS

N 6 -methyladenosine is required for the hypoxic stabilization of specific mRNAs

(2017) Nate J. Fry et al.   RNA

Tensor factorization toward precision medicine

(2016) Yuan Luo et al.   BRIEFINGS IN BIOINFORMATICS

Tensor decomposition for multiple-tissue gene expression experiments

(2016) Victoria Hore et al.   NATURE GENETICS

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Hypoxia, vascular smooth muscles and endothelium

(2013) Calvin K. Chan et al.   Acta Pharmaceutica Sinica B

Hypoxia and mitochondrial oxidative metabolism

(2010) Giancarlo Solaini et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols