Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ
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Title
Epigenomic landscape of human colorectal cancer unveils an aberrant core of pan-cancer enhancers orchestrated by YAP/TAZ
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-04-20
DOI
10.1038/s41467-021-22544-y
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Related references
Note: Only part of the references are listed.- Cooperation between MYC and β‐catenin in liver tumorigenesis requires Yap/Taz
- (2020) Andrea Bisso et al. HEPATOLOGY
- Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer
- (2020) Hae-Ock Lee et al. NATURE GENETICS
- Accurate estimation of cell composition in bulk expression through robust integration of single-cell information
- (2020) Brandon Jew et al. Nature Communications
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- (2020) Amber N. Habowski et al. Communications Biology
- Chromatin-Based Classification of Genetically Heterogeneous AMLs into Two Distinct Subtypes with Diverse Stemness Phenotypes
- (2019) Guoqiang Yi et al. Cell Reports
- YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration
- (2018) Shiro Yui et al. Cell Stem Cell
- YAP/TAZ upstream signals and downstream responses
- (2018) Antonio Totaro et al. NATURE CELL BIOLOGY
- High-resolution TADs reveal DNA sequences underlying genome organization in flies
- (2018) Fidel Ramírez et al. Nature Communications
- Promoter capture Hi-C-based identification of recurrent noncoding mutations in colorectal cancer
- (2018) Giulia Orlando et al. NATURE GENETICS
- Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4
- (2018) Francesca Zanconato et al. NATURE MEDICINE
- A neural network based model effectively predicts enhancers from clinical ATAC-seq samples
- (2018) Asa Thibodeau et al. Scientific Reports
- Nextflow enables reproducible computational workflows
- (2017) Paolo Di Tommaso et al. NATURE BIOTECHNOLOGY
- Epigenetic plasticity and the hallmarks of cancer
- (2017) William A. Flavahan et al. SCIENCE
- Selective analysis of cancer-cell intrinsic transcriptional traits defines novel clinically relevant subtypes of colorectal cancer
- (2017) Claudio Isella et al. Nature Communications
- Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenome
- (2017) Andrea J. Cohen et al. Nature Communications
- CMScaller: an R package for consensus molecular subtyping of colorectal cancer pre-clinical models
- (2017) Peter W. Eide et al. Scientific Reports
- YAP/TAZ at the Roots of Cancer
- (2016) Francesca Zanconato et al. CANCER CELL
- BCAM and LAMA5 Mediate the Recognition between Tumor Cells and the Endothelium in the Metastatic Spreading of KRAS-Mutant Colorectal Cancer
- (2016) A. Bartolini et al. CLINICAL CANCER RESEARCH
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Integrated genomic analysis of colorectal cancer progression reveals activation of EGFR through demethylation of the EREG promoter
- (2016) X Qu et al. ONCOGENE
- Hippo Pathway Regulation of Gastrointestinal Tissues
- (2015) Fa-Xing Yu et al. Annual Review of Physiology
- Microsatellite Instability Testing and Its Role in the Management of Colorectal Cancer
- (2015) Hisato Kawakami et al. CURRENT TREATMENT OPTIONS IN ONCOLOGY
- β-Catenin destruction complex-independent regulation of Hippo–YAP signaling by APC in intestinal tumorigenesis
- (2015) Jing Cai et al. GENES & DEVELOPMENT
- Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells
- (2015) Monika S. Kowalczyk et al. GENOME RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Yap-dependent reprogramming of Lgr5+ stem cells drives intestinal regeneration and cancer
- (2015) Alex Gregorieff et al. NATURE
- TEAD and YAP regulate the enhancer network of human embryonic pancreatic progenitors
- (2015) Inês Cebola et al. NATURE CELL BIOLOGY
- Genome-wide association between YAP/TAZ/TEAD and AP-1 at enhancers drives oncogenic growth
- (2015) Francesca Zanconato et al. NATURE CELL BIOLOGY
- The consensus molecular subtypes of colorectal cancer
- (2015) Justin Guinney et al. NATURE MEDICINE
- ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
- (2015) Christian Schmidl et al. NATURE METHODS
- Efficient genetic engineering of human intestinal organoids using electroporation
- (2015) Masayuki Fujii et al. Nature Protocols
- TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
- (2015) Antonio Colaprico et al. NUCLEIC ACIDS RESEARCH
- Systematic pan-cancer analysis of tumour purity
- (2015) Dvir Aran et al. Nature Communications
- YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
- (2015) Claudia Stein et al. PLoS Genetics
- YAP/TAZ Incorporation in the β-Catenin Destruction Complex Orchestrates the Wnt Response
- (2014) Luca Azzolin et al. CELL
- Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012
- (2014) Jacques Ferlay et al. INTERNATIONAL JOURNAL OF CANCER
- Dual role of YAP and TAZ in renewal of the intestinal epithelium
- (2014) Masamichi Imajo et al. NATURE CELL BIOLOGY
- Enhancer alterations in cancer: a source for a cell identity crisis
- (2014) Ken J Kron et al. Genome Medicine
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- A colorectal cancer classification system that associates cellular phenotype and responses to therapy
- (2013) Anguraj Sadanandam et al. NATURE MEDICINE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Cancer Genetics and Epigenetics: Two Sides of the Same Coin?
- (2012) Jueng Soo You et al. CANCER CELL
- Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
- (2012) Caryn S. Ross-Innes et al. NATURE
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Epigenomic Enhancer Profiling Defines a Signature of Colon Cancer
- (2012) B. Akhtar-Zaidi et al. SCIENCE
- MEME-ChIP: motif analysis of large DNA datasets
- (2011) Philip Machanick et al. BIOINFORMATICS
- PHLDA1 Expression Marks the Putative Epithelial Stem Cells and Contributes to Intestinal Tumorigenesis
- (2011) A. Sakthianandeswaren et al. CANCER RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
- (2010) Lihua J Zhu et al. BMC BIOINFORMATICS
- FOXQ1 Is Overexpressed in Colorectal Cancer and Enhances Tumorigenicity and Tumor Growth
- (2010) H. Kaneda et al. CANCER RESEARCH
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
- (2009) Toshiro Sato et al. NATURE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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