On Defining and Finding Islands of Trees and Mitigating Large Island Bias

A Triassic stem-salamander from Kyrgyzstan and the origin of salamanders

(2020) Rainer R. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny of Paleozoic limbed vertebrates reassessed through revision and expansion of the largest published relevant data matrix

(2019) David Marjanović et al.   PeerJ

Summarizing the solution space in tumor phylogeny inference by multiple consensus trees

(2019) Nuraini Aguse et al.   BIOINFORMATICS

A new fast method for inferring multiple consensus trees using k-medoids

(2018) Nadia Tahiri et al.   BMC EVOLUTIONARY BIOLOGY

33 million year old Myotis (Chiroptera, Vespertilionidae) and the rapid global radiation of modern bats

(2017) Gregg F. Gunnell et al.   PLoS One

Stem caecilian from the Triassic of Colorado sheds light on the origins of Lissamphibia

(2017) Jason D. Pardo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference

(2015) Olga Chernomor et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Impacts of Terraces on Phylogenetic Inference

(2015) Michael J. Sanderson et al.   SYSTEMATIC BIOLOGY

Multiple consensus trees: a method to separate divergent genes

(2013) Alain Guénoche   BMC BIOINFORMATICS

Weighted compromise trees: a method to summarize competing phylogenetic hypotheses

(2012) Michael J. Sharkey et al.   CLADISTICS

The Braincase of Eocaecilia micropodia (Lissamphibia, Gymnophiona) and the Origin of Caecilians

(2012) Hillary C. Maddin et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

TreeOfTrees Method to Evaluate the Congruence Between Gene Trees

(2011) Pierre Darlu et al.   JOURNAL OF CLASSIFICATION

Terraces in Phylogenetic Tree Space

(2011) M. J. Sanderson et al.   SCIENCE

Guided Tree Topology Proposals for Bayesian Phylogenetic Inference

(2011) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Scutifolium jordanicum gen. et sp. nov. (Cabombaceae), an aquatic fossil plant from the Lower Cretaceous of Jordan, and the relationships of related leaf fossils to living genera

(2008) David Winship Taylor et al.   AMERICAN JOURNAL OF BOTANY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Trees of Trees: An Approach to Comparing Multiple Alternative Phylogenies

(2008) Tom M. W. Nye   SYSTEMATIC BIOLOGY

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

(2008) Clemens Lakner et al.   SYSTEMATIC BIOLOGY

Calculating SPR distances between trees

(2007) Pablo A. Goloboff   CLADISTICS