Crystal structure of a far-red–sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism

Structural elements regulating the photochromicity in a cyanobacteriochrome

(2020) Xiuling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An automated platform for in situ serial crystallography at room temperature

(2020) Zhong Ren et al.   IUCrJ

Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing

(2019) Olena S. Oliinyk et al.   Nature Communications

Diverse Chromatic Acclimation Processes Regulating Phycoerythrocyanin and Rod-Shaped Phycobilisome in Cyanobacteria

(2019) Yuu Hirose et al.   Molecular Plant

Identification of the Deprotonated Pyrrole Nitrogen of the Bilin-based Photoreceptor by Raman Spectroscopy with an Advanced Computational Analysis

(2019) Shinsuke Osoegawa et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin

(2019) Keiji Fushimi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanobacteriochromes: photoreceptors covering the entire UV-to-visible spectrum

(2019) Keiji Fushimi et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structural basis of molecular logic OR in a dual-sensor histidine kinase

(2019) Heewhan Shin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices

(2019) Angeles Hueso-Gil et al.   ACS Synthetic Biology

Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells

(2018) Matthew Blain-Hartung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Crystal-on-crystal chips for in situ serial diffraction at room temperature

(2018) Zhong Ren et al.   LAB ON A CHIP

Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4

(2018) Sunghyuk Lim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diverse light responses of cyanobacteria mediated by phytochrome superfamily photoreceptors

(2018) Lisa B. Wiltbank et al.   NATURE REVIEWS MICROBIOLOGY

Structure of phycobilisome from the red alga Griffithsia pacifica

(2017) Jun Zhang et al.   NATURE

The Expanded Red/Green Cyanobacteriochrome Lineage: An Evolutionary Hot Spot

(2017) Keiji Fushimi et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Distinctive Properties of Dark Reversion Kinetics between Two Red/Green-Type Cyanobacteriochromes and their Application in the Photoregulation of cAMP Synthesis

(2017) Keiji Fushimi et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes

(2017) Nathan C. Rockwell et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Long-range allosteric signaling in red light–regulated diguanylyl cyclases

(2017) Geoffrey Gourinchas et al.   Science Advances

Identification of Cyanobacteriochromes Detecting Far-Red Light

(2016) Nathan C. Rockwell et al.   BIOCHEMISTRY

Cyanobacteriochrome Photoreceptors Lacking the Canonical Cys Residue

(2016) Keiji Fushimi et al.   BIOCHEMISTRY

Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin

(2016) Yoshinori Hagiwara et al.   FEBS LETTERS

Crystal Structure of Deinococcus Phytochrome in the Photoactivated State Reveals a Cascade of Structural Rearrangements during Photoconversion

(2016) E. Sethe Burgie et al.   STRUCTURE

Repurposing Synechocystis PCC6803 UirS–UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli

(2016) Prabha Ramakrishnan et al.   ACS Synthetic Biology

Photoconversion and Fluorescence Properties of a Red/Green-Type Cyanobacteriochrome AM1_C0023g2 That Binds Not Only Phycocyanobilin But Also Biliverdin

(2016) Keiji Fushimi et al.   Frontiers in Microbiology

Identification of DXCF cyanobacteriochrome lineages with predictable photocycles

(2015) Nathan C. Rockwell et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Three cyanobacteriochromes work together to form a light color-sensitive input system for c-di-GMP signaling of cell aggregation

(2015) Gen Enomoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RfpA, RfpB, and RfpC are the Master Control Elements of Far-Red Light Photoacclimation (FaRLiP)

(2015) Chi Zhao et al.   Frontiers in Microbiology

A New Type of Dual-Cys Cyanobacteriochrome GAF Domain Found in Cyanobacterium Acaryochloris marina, Which Has an Unusual Red/Blue Reversible Photoconversion Cycle

(2014) Rei Narikawa et al.   BIOCHEMISTRY

Femtosecond Dynamics in the Lactim Tautomer of Phycocyanobilin: A Long-Wavelength Absorbing Model Compound for the Phytochrome Chromophore

(2014) Patrick Singer et al.   CHEMPHYSCHEM

Structure and Mechanism of the Phycobiliprotein Lyase CpcT

(2014) Wei Zhou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2163g3

(2014) Sunghyuk Lim et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Orange fluorescent proteins constructed from cyanobacteriochromes chromophorylated with phycoerythrobilin

(2014) Ya-Fang Sun et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light

(2014) F. Gan et al.   SCIENCE

The structure of allophycocyanin B fromSynechocystisPCC 6803 reveals the structural basis for the extreme redshift of the terminal emitter in phycobilisomes

(2014) Pan-Pan Peng et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Photoreceptor Signaling Networks in Plant Responses to Shade

(2013) Jorge J. Casal   Annual Review of Plant Biology

Photoconversion Mechanism of the Second GAF Domain of Cyanobacteriochrome AnPixJ and the Cofactor Structure of Its Green-Absorbing State

(2013) Francisco Velazquez Escobar et al.   BIOCHEMISTRY

Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals

(2013) Kiryl D. Piatkevich et al.   CHEMICAL SOCIETY REVIEWS

Unusual Spectral Properties of Bacteriophytochrome Agp2 Result from a Deprotonation of the Chromophore in the Red-absorbing Form Pr

(2013) Benjamin Zienicke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle

(2013) Y. Hirose et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanistic Insight into the Photosensory Versatility of DXCF Cyanobacteriochromes

(2012) Nathan C. Rockwell et al.   BIOCHEMISTRY

Red/Green Cyanobacteriochromes: Sensors of Color and Power

(2012) Nathan C. Rockwell et al.   BIOCHEMISTRY

Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily

(2012) Nathan C. Rockwell et al.   BIOCHEMISTRY

Allophycocyanin and phycocyanin crystal structures reveal facets of phycobilisome assembly

(2012) Ailie Marx et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Structures of cyanobacteriochromes from phototaxis regulators AnPixJ and TePixJ reveal general and specific photoconversion mechanism

(2012) R. Narikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes

(2012) E. Sethe Burgie et al.   STRUCTURE

The Cyanobacteriochrome, TePixJ, Isomerizes Its Own Chromophore by Converting Phycocyanobilin to Phycoviolobilin

(2011) Takami Ishizuka et al.   BIOCHEMISTRY

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome

(2011) Xiaojing Yang et al.   NATURE

Bright and stable near-infrared fluorescent protein for in vivo imaging

(2011) Grigory S Filonov et al.   NATURE BIOTECHNOLOGY

An infrared fluorescent protein for deeper imaging

(2011) Jérôme Lecoq et al.   NATURE BIOTECHNOLOGY

Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes

(2011) N. C. Rockwell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome

(2011) C. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fused-Gene Approach to Photoswitchable and Fluorescent Biliproteins

(2010) Juan Zhang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Multichromatic Control of Gene Expression in Escherichia coli

(2010) Jeffrey J. Tabor et al.   JOURNAL OF MOLECULAR BIOLOGY

Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

(2010) Dmitriy M. Chudakov et al.   PHYSIOLOGICAL REVIEWS

Accounting for Solvent Accessibility and Secondary Structure in Protein Phylogenetics Is Clearly Beneficial

(2010) Si Quang Le et al.   SYSTEMATIC BIOLOGY

Phytochrome functions in Arabidopsis development

(2009) K. A. Franklin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Distinct classes of red/far-red photochemistry within the phytochrome superfamily

(2009) N. C. Rockwell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian Expression of Infrared Fluorescent Proteins Engineered from a Bacterial Phytochrome

(2009) X. Shu et al.   SCIENCE

Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria

(2008) Masahiko Ikeuchi et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

The structure of a complete phytochrome sensory module in the Pr ground state

(2008) L.-O. Essen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

(2008) X. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA