Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road

Host Range Evolution of Potyviruses: A Global Phylogenetic Analysis

(2020) Benoît Moury et al.   Viruses-Basel

The Potyviruses: An Evolutionary Synthesis Is Emerging

(2020) Adrian J. Gibbs et al.   Viruses-Basel

Dating the emergence of human pathogens

(2020) Simon Y. W. Ho et al.   SCIENCE

The evolutionary history and global spatio-temporal dynamics of potato virus Y

(2020) Fangluan Gao et al.   Virus Evolution

Sequence variations among seventeen new radish isolates of Turnip mosaic virus showing differential pathogenicity and infectivity in Nicotiana benthamiana, Brassica rapa, and Raphanus sativus

(2019) Junsu Gong et al.   PHYTOPATHOLOGY

Ancient pathogen genomics as an emerging tool for infectious disease research

(2019) Maria A. Spyrou et al.   NATURE REVIEWS GENETICS

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

The genetic diversity of narcissus viruses related to turnip mosaic virus blur arbitrary boundaries used to discriminate potyvirus species

(2018) Kazusato Ohshima et al.   PLoS One

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

(2017) Xuhua Xia   JOURNAL OF HEREDITY

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)

(2017) Elliot J Lefkowitz et al.   NUCLEIC ACIDS RESEARCH

The genetic structure of Turnip mosaic virus population reveals the rapid expansion of a new emergent lineage in China

(2017) Xiangdong Li et al.   Virology Journal

The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus

(2017) Ryosuke Yasaka et al.   Scientific Reports

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

(2016) Filip Bielejec et al.   MOLECULAR BIOLOGY AND EVOLUTION

tipdatingbeast : an r package to assist the implementation of phylogenetic tip-dating tests using beast

(2016) Adrien Rieux et al.   Molecular Ecology Resources

Temporal analysis of reassortment and molecular evolution of Cucumber mosaic virus: Extra clues from its segmented genome

(2016) Kazusato Ohshima et al.   VIROLOGY

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

(2015) Sebastián Duchêne et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Origin of Cultivation and Proto-Weeds, Long Before Neolithic Farming

(2015) Ainit Snir et al.   PLoS One

Phylodynamic evidence of the migration of turnip mosaic potyvirus from Europe to Australia and New Zealand

(2014) R. Yasaka et al.   JOURNAL OF GENERAL VIROLOGY

The Temporal Evolution and Global Spread of Cauliflower mosaic virus, a Plant Pararetrovirus

(2014) Ryosuke Yasaka et al.   PLoS One

Mining Herbaria for Plant Pathogen Genomes: Back to the Future

(2014) Kentaro Yoshida et al.   PLoS Pathogens

South-East Asia is the center of origin, diversity and dispersion of the rice blast fungus,Magnaporthe oryzae

(2013) Dounia Saleh et al.   NEW PHYTOLOGIST

Turnip Mosaic Potyvirus Probably First Spread to Eurasian Brassica Crops from Wild Orchids about 1000 Years Ago

(2013) Huy D. Nguyen et al.   PLoS One

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Potyviruses and the Digital Revolution

(2010) Adrian Gibbs et al.   Annual Review of Phytopathology

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Evolutionary trajectory of turnip mosaic virus populations adapting to a new host

(2009) K. Ohshima et al.   JOURNAL OF GENERAL VIROLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

The Origins of Plant Pathogens in Agro-Ecosystems

(2008) Eva H. Stukenbrock et al.   Annual Review of Phytopathology

Occurrence and molecular characterization of Turkish isolates ofTurnip mosaic virus

(2008) S. Korkmaz et al.   PLANT PATHOLOGY

An overlapping essential gene in the Potyviridae

(2008) B. Y.-W. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA