Deconvoluting global cytokine signaling networks in natural killer cells

Divergent Role for STAT5 in the Adaptive Responses of Natural Killer Cells

(2020) Gabriela M. Wiedemann et al.   Cell Reports

Fine-Tuning Cytokine Signals

(2019) Jian-Xin Lin et al.   Annual Review of Immunology

Quantifying NK cell growth and survival changes in response to cytokines and regulatory checkpoint blockade helps identify optimal culture and expansion conditions

(2019) Robert J. Hennessy et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Epigenetic control of innate and adaptive immune memory

(2018) Colleen M. Lau et al.   NATURE IMMUNOLOGY

Non-redundant ISGF3 Components Promote NK Cell Survival in an Auto-regulatory Manner during Viral Infection

(2018) Clair D. Geary et al.   Cell Reports

Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells

(2017) Alejandro V. Villarino et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Chimeric antigen receptors: driving immunology towards synthetic biology

(2016) Michel Sadelain   CURRENT OPINION IN IMMUNOLOGY

Tracking the fate of antigen-specific versus cytokine-activated natural killer cells after cytomegalovirus infection

(2016) Tsukasa Nabekura et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Type I IFN promotes NK cell expansion during viral infection by protecting NK cells against fratricide

(2016) Sharline Madera et al.   JOURNAL OF EXPERIMENTAL MEDICINE

NK Cell–Specific Gata3 Ablation Identifies the Maturation Program Required for Bone Marrow Exit and Control of Proliferation

(2016) Alaa Kassim Ali et al.   JOURNAL OF IMMUNOLOGY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Cytokine-induced memory-like natural killer cells exhibit enhanced responses against myeloid leukemia

(2016) Rizwan Romee et al.   Science Translational Medicine

Cytomegalovirus Infection Drives Adaptive Epigenetic Diversification of NK Cells with Altered Signaling and Effector Function

(2015) Heinrich Schlums et al.   IMMUNITY

Cutting Edge: Stage-Specific Requirement of IL-18 for Antiviral NK Cell Expansion

(2015) Sharline Madera et al.   JOURNAL OF IMMUNOLOGY

The UCSC Genome Browser database: 2016 update

(2015) Matthew L. Speir et al.   NUCLEIC ACIDS RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Cytomegalovirus generates long-lived antigen-specific NK cells with diminished bystander activation to heterologous infection

(2014) Gundula Min-Oo et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Cutting Edge: Priming of NK Cells by IL-18

(2014) J. Chaix et al.   JOURNAL OF IMMUNOLOGY

Controlling Natural Killer Cell Responses: Integration of Signals for Activation and Inhibition

(2013) Eric O. Long et al.   Annual Review of Immunology

Control of Human Viral Infections by Natural Killer Cells

(2013) Stephanie Jost et al.   Annual Review of Immunology

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

CDK8-Mediated STAT1-S727 Phosphorylation Restrains NK Cell Cytotoxicity and Tumor Surveillance

(2013) Eva Maria Putz et al.   Cell Reports

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Cytokine activation induces human memory-like NK cells

(2012) R. Romee et al.   BLOOD

Proinflammatory cytokine signaling required for the generation of natural killer cell memory

(2012) Joseph C. Sun et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Sustained effector function of IL-12/15/18–preactivated NK cells against established tumors

(2012) Jing Ni et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Molecular definition of the identity and activation of natural killer cells

(2012) Natalie A Bezman et al.   NATURE IMMUNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Interleukin-2 and Inflammation Induce Distinct Transcriptional Programs that Promote the Differentiation of Effector Cytolytic T Cells

(2010) Matthew E. Pipkin et al.   IMMUNITY

Suppressor of Cytokine Signaling 2 Regulates IL-15-Primed Human NK Cell Function via Control of Phosphorylated Pyk2

(2010) S. H. Lee et al.   JOURNAL OF IMMUNOLOGY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

genenames.org: the HGNC resources in 2011

(2010) R. L. Seal et al.   NUCLEIC ACIDS RESEARCH

Adaptive immune features of natural killer cells

(2009) Joseph C. Sun et al.   NATURE

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

Cytokine-induced memory-like natural killer cells

(2009) Megan A. Cooper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lymphotoxin-Mediated Crosstalk between B Cells and Splenic Stroma Promotes the Initial Type I Interferon Response to Cytomegalovirus

(2008) Kirsten Schneider et al.   Cell Host & Microbe

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY