Towards complete and error-free genome assemblies of all vertebrate species
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Title
Towards complete and error-free genome assemblies of all vertebrate species
Authors
Keywords
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Journal
NATURE
Volume 592, Issue 7856, Pages 737-746
Publisher
Springer Science and Business Media LLC
Online
2021-04-29
DOI
10.1038/s41586-021-03451-0
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- (2019) Harris A Lewin et al. GigaScience
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- (2018) Heng Li BIOINFORMATICS
- Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D
- (2018) Piroon Jenjaroenpun et al. NUCLEIC ACIDS RESEARCH
- Earth BioGenome Project: Sequencing life for the future of life
- (2018) Harris A. Lewin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species
- (2018) Emma C. Teeling et al. Annual Review of Animal Biosciences
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- (2018) Ilaria Cataldo et al. Frontiers in Molecular Neuroscience
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- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
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- (2016) Aussie Suzuki et al. NATURE CELL BIOLOGY
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