Proteomic fingerprinting facilitates biodiversity assessments in understudied ecosystems: A case study on integrated taxonomy of deep sea copepods

Unsupervised biodiversity estimation using proteomic fingerprints from MALDI‐TOF MS data

(2020) Sven Rossel et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Revealing higher than expected diversity of Harpacticoida (Crustacea:Copepoda) in the North Sea using MALDI-TOF MS and molecular barcoding

(2019) S. Rossel et al.   Scientific Reports

High-resolution community analysis of deep-sea copepods using MALDI-TOF protein fingerprinting

(2018) Patricia Kaiser et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Automatic specimen identification of Harpacticoids (Crustacea:Copepoda) using Random Forest and MALDI-TOF mass spectra, including a post hoc test for false positive discovery

(2018) Sven Rossel et al.   Methods in Ecology and Evolution

Vertical distribution and structure of copepod (Arthropoda: Copepoda) assemblages in two different seasons down to 1,200 m in the tropical Southwestern Atlantic

(2018) Cristina de Oliveira Dias et al.   Zoologia

OUP accepted manuscript

(2018)   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Do molecular phylogenies unravel the relationships among the evolutionary young “Brafordian” families (Copepoda; Calanoida)?

(2018) Silke Laakmann et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Unravelling diversity of deep-sea copepods using integrated morphological and molecular techniques

(2017) Maya Bode et al.   JOURNAL OF PLANKTON RESEARCH

First insights into genus level diversity and biogeography of deep sea benthopelagic calanoid copepods in the South Atlantic and Southern Ocean

(2015) Jasmin Renz et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

NbClust: AnRPackage for Determining the Relevant Number of Clusters in a Data Set

(2015) Malika Charrad et al.   Journal of Statistical Software

Comparative phylogeography and demographic history of five sibling species of Pseudocalanus (Copepoda: Calanoida) in the North Atlantic Ocean

(2014) Ole Nicolai Staurland Aarbakke et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparison of molecular species identification for North Sea calanoid copepods (Crustacea) using proteome fingerprints and DNA sequences

(2013) S. Laakmann et al.   Molecular Ecology Resources

MALDIquant: a versatile R package for the analysis of mass spectrometry data

(2012) S. Gibb et al.   BIOINFORMATICS

Discrimination of freshwater fish species by Matrix-Assisted Laser Desorption/Ionization- Time Of Flight Mass Spectrometry (MALDI-TOF MS): a pilot study

(2012) Pietro Volta et al.   JOURNAL OF LIMNOLOGY

Potential of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for the identification of freshwater zooplankton: a pilot study with three Eudiaptomus (Copepoda: Diaptomidae) species

(2012) Nicoletta Riccardi et al.   JOURNAL OF PLANKTON RESEARCH

A proposed biogeography of the deep ocean floor

(2012) Les Watling et al.   PROGRESS IN OCEANOGRAPHY

Cryptic diversity and comparative phylogeography of the estuarine copepod Acartia tonsa on the US Atlantic coast

(2011) GANG CHEN et al.   MOLECULAR ECOLOGY

Identification of field-caught Culicoides biting midges using matrix-assisted laser desorption/ionization time of flight mass spectrometry

(2011) CHRISTIAN KAUFMANN et al.   PARASITOLOGY

Man and the Last Great Wilderness: Human Impact on the Deep Sea

(2011) Eva Ramirez-Llodra et al.   PLoS One

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

(2010) Matthew D. Wilkerson et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Discrimination of different species from the genus Drosophila by intact protein profiling using matrix-assisted laser desorption ionization mass spectrometry

(2010) Ralph Feltens et al.   BMC EVOLUTIONARY BIOLOGY

A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)

(2010) Ann Bucklin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A Census of Marine Biodiversity Knowledge, Resources, and Future Challenges

(2010) Mark John Costello et al.   PLoS One

Zooplankton diversity analysis through single-gene sequencing of a community sample

(2009) Ryuji J Machida et al.   BMC GENOMICS

DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition

(2009) Ann Bucklin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera�:�Curculionidae)

(2008) Jonas J. Astrin et al.   INVERTEBRATE SYSTEMATICS

Fish Authentication by MALDI-TOF Mass Spectrometry

(2008) Maria Fiorella Mazzeo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY