Descriptive study of the mitogenome of the diamondback squid ( Thysanoteuthis rhombus Troschel, 1857) and the evolution of mitogenome arrangement in oceanic squids

Distribution, age and growth of the diamondback squid, Thysanoteuthis rhombus (Cephalopoda: Thysanoteuthidae) from the tropical Arabian Sea

(2020) Kurichithara K. Sajikumar et al.   FISHERIES RESEARCH

Complete Mitochondrial Genomes of Two Toxin-Accumulated Nassariids (Neogastropoda: Nassariidae: Nassarius) and Their Implication for Phylogeny

(2020) Yi Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

qMGR: A new approach for quantifying mitochondrial genome rearrangement

(2020) Jifeng Zhang et al.   MITOCHONDRION

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

Phylogenetics and comparative analysis of the mitochondrial genomes of three violet‐ringed octopuses

(2019) Yan Tang et al.   ZOOLOGICA SCRIPTA

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

(2019) Dong Zhang et al.   Molecular Ecology Resources

Gene arrangement and sequence of mitochondrial genomes yield insights into the phylogeny and evolution of bees and sphecid wasps (Hymenoptera: Apoidea)

(2018) Bo-Ying Zheng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial phylogenomics and genome rearrangements in the barklice (Insecta: Psocodea)

(2018) Kazunori Yoshizawa et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial gene order evolution in Mollusca: Inference of the ancestral state from the mtDNA of Chaetopleura apiculata (Polyplacophora, Chaetopleuridae)

(2018) Davide Guerra et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Whole mitochondrial genome of the Ram’s Horn Squid shines light on the phylogenetic position of the monotypic order Spirulida (Haeckel, 1896)

(2017) Jan M. Strugnell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrial genome diversity in dagger and needle nematodes (Nematoda: Longidoridae)

(2017) J. E. Palomares-Rius et al.   Scientific Reports

Evaluation of the 5′ end of the 16S rRNA gene as a DNA barcode marker for the Cephalopoda

(2016) Gustavo Sanchez et al.   FISHERIES SCIENCE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete mitochondrial genomes of Trisidos kiyoni and Potiarca pilula: Varied mitochondrial genome size and highly rearranged gene order in Arcidae

(2016) Shao’e Sun et al.   Scientific Reports

Analysis of codon usage bias of mitochondrial genome in Bombyx moriand its relation to evolution

(2014) Lei Wei et al.   BMC EVOLUTIONARY BIOLOGY

The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review

(2014) A. Louise Allcock et al.   JOURNAL OF NATURAL HISTORY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharaonis), and their application to the phylogenetic analysis of Decapodiformes

(2013) Yuumi Kawashima et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny

(2013) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

The Complete Mitochondrial Genomes of Two Octopods Cistopus chinensis and Cistopus taiwanicus: Revealing the Phylogenetic Position of the Genus Cistopus within the Order Octopoda

(2013) Rubin Cheng et al.   PLoS One

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

(2012) Annie R Lindgren et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenomics does not resolve deep molluscan relationships (yet?)

(2012) I. Stöger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Determination of the complete mitochondrial DNA sequence of Octopus minor

(2011) Rubin Cheng et al.   MOLECULAR BIOLOGY REPORTS

What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda?

(2011) A. LOUISE ALLCOCK et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Molecular inference of phylogenetic relationships among Decapodiformes (Mollusca: Cephalopoda) with special focus on the squid Order Oegopsida

(2010) Annie R. Lindgren   MOLECULAR PHYLOGENETICS AND EVOLUTION