4.5 Article

Experimental and Theoretical Characterization of Ultrafast Water-Soluble Photochromic Photoacids

Journal

JOURNAL OF PHYSICAL CHEMISTRY B
Volume 125, Issue 16, Pages 4120-4131

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.jpcb.1c00644

Keywords

-

Funding

  1. National Science Foundation [NSF-CHE 1464584, NSF-CHE-1551994, NSF-CHE-1565613]

Ask authors/readers for more resources

UV-visible transient absorption spectroscopy and quantum mechanical simulations were used to study the photochemical mechanism of two metastable merocyanine/spiropyran photoacids, revealing that isomerization leads to deprotonation and confirming that cis-phenylhydroxy-MCH is a stronger acid than trans-phenylhydroxy-MCH based on previous studies. Further investigation is needed to accurately evaluate the physical basis for the acidity of the cis photoacids.
UV-visible transient absorption spectroscopy and quantum mechanical simulations are combined to elucidate the photochemical mechanism of two metastable merocyanine/spiropyran photoacids, 2-[(E)-2-(2-hydroxyphenyl)ethenyl]-3,3-dimethyl-1-(3-sulfopropyl)-3H-indol-1-ium (phenylhydroxy-MCH) and 2-[(E)-2-(1H-indazol-7-yl)ethenyl]-3-(3-sulfopropyl)-1,3-benzothiazol-3- ium (indazole-MCH). Transient absorption spectra demonstrate that trans-acid isomerization to the cis form results in deprotonation on a picosecond time scale. Ring closure to form spiropyran follows promptly from the appropriate conformation or follows at longer time delays (>> 3.5 ns) following a barrier crossing for single-bond isomerization to the appropriate conformation. Consistent with the results of Berton et al. [Chem. Sci. 2020, 11, 8457-8468], we find that cis-phenylhydroxy-MCH is a stronger acid than trans-phenylhydroxy-MCH. The decrease in pK(a) upon isomerization is further investigated to benchmark quantum chemical methods for their accuracy. Calculations were performed with nine levels of theory including continuum solvent models and explicit water. The calculations are not sufficient to describe the Delta pK(a) following isomerization of these photoacids, and more work is necessary to properly evaluate the physical basis for the acidity of the cis photoacids.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Organic

Glycosyl Exchange of Unactivated Glycosidic Bonds: Suppressing or Embracing Side Reactivity in Catalytic Glycosylations

Joshua L. Martin, Girish C. Sati, Tanmay Malakar, Jessica Hatt, Paul M. Zimmerman, John Montgomery

Summary: A novel mode of reactivity involving a dioxolenium ion as a key intermediate that promotes both glycosylation and glycosyl exchange pathways has been discovered through experimental and computational mechanistic studies. By modifying the catalyst structure, it is possible to selectively favor one pathway, leading to improved multicomponent iterative couplings and glycosyl exchange processes.

JOURNAL OF ORGANIC CHEMISTRY (2022)

Article Chemistry, Multidisciplinary

The numerical evaluation of Slater integrals on graphics processing units

Duy-Khoi Dang, Leighton W. Wilson, Paul M. Zimmerman

Summary: This article introduces SlaterGPU, a GPU-accelerated library using OpenACC for numerically computing Slater-type orbital (STO) integrals. The electron repulsion integrals (ERI) are computed using the Coulomb potential of the Slater basis function under the RI approximation. By evaluating the Slater integrals in mixed-precision, the ERIs achieve speedups of over 80x, fully exploiting the performance capabilities of modern GPUs. Parallelization on multiple GPUs enables integral throughput of over 3 million integrals per second, making STO integral throughput comparable to single-threaded conventional Gaussian integration schemes. Benchmark tests on the fluorine exchange reaction barrier in fluoromethane and the singlet-triplet gap of cyclobutadiene demonstrate the library's ability to generate the necessary integrals for configuration interaction with up to 6h functions in the auxiliary basis.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2022)

Article Chemistry, Physical

Advances in Parallel Heat Bath Configuration Interaction

Duy-Khoi Dang, Joshua A. Kammeraad, Paul M. Zimmerman

Summary: The heat-bath configuration interaction (HCI) method improves the computational efficiency for approaching the full CI limit. This study introduces computational improvements to the HCI algorithm, targeting speed, parallel efficiency, and memory requirements. The new implementation utilizes a hash function and MPI and OpenMP for parallelism, allowing for the study of a large active space and achieving high parallel efficiency. The accuracy of the new HCI implementation is benchmarked and applied to a challenging complex.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Multidisciplinary

Photochemically-Driven CO2 Release Using a Metastable-State Photoacid for Energy Efficient Direct Air Capture

Uvinduni I. Premadasa, Vera Bocharova, Audrey R. Miles, Diana Stamberga, Stella Belony, Vyacheslav S. Bryantsev, Adnan Elgattar, Yi Liao, Joshua T. Damron, Michelle K. Kidder, Benjamin Doughty, Radu Custelcean, Ying-Zhong Ma

Summary: One of the challenges in current DAC technologies is the high energy cost for sorbent regeneration and CO2 release, making large-scale deployment economically unfeasible. In this study, a photochemically-driven approach using a unique photoacid was developed for CO2 release in DAC systems. The results showed that under light irradiation, a significant conversion of total inorganic carbon to CO2 was achieved, confirming the feasibility of energy-efficient CO2 release using light instead of heat.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Chemistry, Medicinal

Machine Learning Strategies for Reaction Development: Toward the Low-Data Limit

Eunjae Shim, Ambuj Tewari, Tim Cernak, Paul M. Zimmerman

Summary: Machine learning models are increasingly used to predict the outcomes of organic chemical reactions. These models rely on a large amount of reaction data, which contrasts with the way expert chemists discover new reactions using a small number of relevant transformations. Transfer learning and active learning can address this gap and promote the application of machine learning in real-world challenges of organic synthesis. This Perspective introduces active and transfer learning and explores potential opportunities for further research, particularly in the prospective development of chemical transformations.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2023)

Article Chemistry, Multidisciplinary

Formal Cross-Coupling of Amines and Carboxylic Acids to Form sp3-sp2 Carbon-Carbon Bonds

James L. Douthwaite, Ruheng Zhao, Eunjae Shim, Babak Mahjour, Paul M. Zimmerman, Tim Cernak

Summary: We developed a new reaction method for the cross-coupling of alkyl amines and aryl carboxylic acids, by preactivating the amine-acid building blocks. This reaction forms C-(sp(3))-C-(sp(2)) bonds and shows good yields for various substrates, including pharmaceutical compounds. High-throughput experimentation led to the discovery of performance-enhancing additives such as phthalimide, RuCl3, and GaCl3.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Watching Excited State Dynamics with Optical and X-ray Probes: The Excited State Dynamics of Aquocobalamin and Hydroxocobalamin

Roseanne J. Sension, Taylor P. McClain, Ryan M. Lamb, Roberto Alonso-Mori, Frederico Alves Lima, Fernando Ardana-Lamas, Mykola Biednov, Matthieu Chollet, Taewon Chung, Aniruddha Deb, Paul A. Dewan Jr, Leland B. Gee, Joel Huang Ze En, Yifeng Jiang, Dmitry Khakhulin, Jianhao Li, Lindsay B. Michocki, Nicholas A. Miller, Florian Otte, Yohei Uemura, Tim B. van Driel, James E. Penner-Hahn

Summary: Femtosecond time-resolved X-ray absorption, X-ray emission, and broadband UV-vis transient absorption were used to investigate the atomic and electronic dynamics of two vitamin B-12 compounds after photoexcitation. Sequential structural evolution and coherent bond elongation were observed, followed by recoil to a relaxed excited state structure. The formation of a metal-centered excited state with a lifetime of 2-5 ps was suggested by time-resolved X-ray emission and optical transient absorption.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Controlling Catalyst Behavior in Lewis Acid-Catalyzed Carbonyl-Olefin Metathesis

Sophi R. Todtz, Cory W. Schneider, Tanmay Malakar, Clare Anderson, Heather Koska, Paul M. Zimmerman, James J. Devery

Summary: Lewis acid-catalyzed carbonyl-olefin metathesis has revealed new behaviors of Lewis acids, particularly the solution behaviors of FeCl3. Adding TMSCl to FeCl3-catalyzed carbonyl-olefin metathesis leads to significant deviations from normal reactivity, mitigating byproduct inhibition and increasing the reaction rate. Quantum chemical simulations suggest the formation of a silylium catalyst that binds to carbonyl groups, with potential utility in carbonyl-based transformations.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Physical

Exchange correlation potentials from full configuration interaction in a Slater orbital basis

Soumi Tribedi, Duy-Khoi Dang, Bikash Kanungo, Vikram Gavini, Paul M. Zimmerman

Summary: The Ryabinkin-Kohut-Staroverov (RKS) theory connects wave function theory with density functional theory, providing accurate exchange-correlation potentials. In this study, the RKS method is developed and tested with Slater atomic orbital basis functions for the first time. By using full configuration interaction computations with Slater orbital basis, the SlaterRKS approach is shown to efficiently produce exchange-correlation potentials without unphysical artifacts. The enforcement of nuclear cusp conditions is crucial for the success of the Slater-basis RKS method. Examples of weakly and strongly correlated molecular systems demonstrate the main features of SlaterRKS.

JOURNAL OF CHEMICAL PHYSICS (2023)

Article Chemistry, Physical

Exact and Model Exchange-Correlation Potentials for Open-Shell Systems

Bikash Kanungo, Jeffrey Hatch, Paul M. Zimmerman, Vikram Gavini

Summary: The conventional approaches to the inverse density functional theory problem assume nondegeneracy of the Kohn-Sham eigenvalues, limiting their use in open-shell systems. This study presents a generalized approach that allows for degenerate KS eigenvalues and fractional occupancy of the orbitals, enabling the handling of noninteracting ensemble-v-representable densities. Comparison of exact and model exchange-correlation potentials shows substantial relative errors in the model potentials.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2023)

Article Chemistry, Multidisciplinary

Oxidative Cross Dehydrogenative Coupling of N-Heterocycles with Aldehydes through C(sp(3))-H Functionalization

Mo Chen, Austin M. Ventura, Soumik Das, Ammar F. Ibrahim, Paul M. Zimmerman, John Montgomery

Summary: Current methodologies for metal-catalyzed cross-couplings require the installation of reactive functional groups on both reaction partners in advance. In contrast, C-H functionalization approaches show potential in simplifying the substrates required; however, challenges such as low reactivity and similar reactivity of different C-H bonds add complexity. This study describes an oxidative cross dehydrogenative coupling of α-amino C(sp(3))-H bonds and aldehydes to produce ketone derivatives using an unusual reaction medium that simultaneously utilizes di-tert-butyl peroxide as an oxidant and zinc metal as a reductant. The method has a broad substrate scope and offers an attractive approach for accessing α-amino ketones through the formal acylation of C-H bonds adjacent to nitrogen in N-heterocycles. Experimental investigation and computational modeling provide evidence for a mechanistic pathway involving cross-selective nickel-mediated cross-coupling of α-amino radicals and acyl radicals.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

Tetrafluorenofulvalene as a sterically frustrated open-shell alkene

Bibek Prajapati, Madan D. Ambhore, Duy-Khoi Dang, Piotr J. Chmielewski, Tadeusz Lis, Carlos J. Gomez-Garcia, Paul M. Zimmerman, Marcin Stepien

Summary: Electronic and steric effects play a crucial role in determining the structure and reactivity of organic compounds. However, tetrafluorenofulvalene (TFF), a twisted alkene, defies conventional rules as its central alkene bond becomes stronger in specific redox states.

NATURE CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

Photoacid for releasing carbon dioxide from sorbent

Osamah Alghazwat, Adnan Elgattar, Yi Liao

Summary: Carbon dioxide (CO2), the main greenhouse gas causing global warming, can be captured and released repeatedly using a photoacid mixed with a well-studied amine. The photoacid's structural design allows for the tuning of its photoactivity, acidity, and solubility, resulting in efficient CO2 release under moderate visible light irradiation.

PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2023)

Article Chemistry, Physical

Inclusion Complexes of a Metastable-State Photoacid with High Acidity and Chemical Stability

Ya-Nan Yuan, Gao-Jie Yan, Zi-Xuan Wang, Yao-Yao Song, Zhao-Yang Wang, Qing-Lun Wang, Chun Yang, Yi Liao

Summary: This study demonstrates that inclusion complexes of the photoacid MCH1 with cyclodextrins can enhance acidity and chemical stability. The addition of cyclodextrins also slows the thermal relaxation of the photoacid and increases its half-life in aqueous solution.

CHEMPHOTOCHEM (2023)

Article Chemistry, Physical

Simulating Electron Transfer Reactions in Solution: Radical-Polar Crossover

Kevin C. Skinner, Josh A. Kammeraad, Troy Wymore, Alison R. H. Narayan, Paul M. Zimmerman

Summary: This study introduces a combined constrained density functional theory and molecular mechanics tool for studying the mechanisms of radical-polar crossover reactions involving organic electron donors. Surprising findings were made, and the importance of considering solvent dynamics in accurately quantifying SET kinetics and thermodynamics was emphasized. This new method proves to be useful for studying reactions in the condensed phase.

JOURNAL OF PHYSICAL CHEMISTRY B (2023)

No Data Available