Cascading effects of composts and cover crops on soil chemistry, bacterial communities and the survival of foodborne pathogens

Local adaptation constrains drought tolerance in a tropical foundation tree

(2020) Kasey E. Barton et al.   JOURNAL OF ECOLOGY

The effects of compost incorporation on soil physical properties in urban soils – A concise review

(2020) Christina N. Kranz et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Survival of Escherichia coli O157 in autoclaved and natural sandy soil mesocosms

(2020) Christopher A. Baker et al.   PLoS One

Changes in the bacterial community structure in soil under conventional and conservation practices throughout a complete maize (Zea mays L.) crop cycle

(2020) Edson A. Romero-Salas et al.   APPLIED SOIL ECOLOGY

Organic farming promotes biotic resistance to foodborne human pathogens

(2019) Matthew S. Jones et al.   JOURNAL OF APPLIED ECOLOGY

Salmonella Newport in soils amended with heat-treated poultry pellets survived longer and more readily transferred to and persisted on spinach

(2019) Manoj K Shah et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deep soil inventories reveal that impacts of cover crops and compost on soil carbon sequestration differ in surface and sub‐surface soils

(2019) N.E. Tautges et al.   GLOBAL CHANGE BIOLOGY

Soil bacterial communities of wheat vary across the growing season and among dryland farming systems

(2019) Suzanne L. Ishaq et al.   GEODERMA

Long-term fertilization changes bacterial diversity and bacterial communities in the maize rhizosphere of Chinese Mollisols

(2018) Qingfeng Wang et al.   APPLIED SOIL ECOLOGY

The century experiment: the first twenty years of UC Davis' Mediterranean agroecological experiment

(2018) Kristina M. Wolf et al.   ECOLOGY

E. coli survival duration in manure-amended soils is affected by spatiotemporal, agricultural, and weather factors: a multi-season, multi-site field study in the Mid-Atlantic U.S.

(2018) Manan Sharma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composting To Inactivate Foodborne Pathogens for Crop Soil Application: A Review

(2018) JOSHUA B. GURTLER et al.   JOURNAL OF FOOD PROTECTION

Agricultural Practices Influence Salmonella Contamination and Survival in Pre-harvest Tomato Production

(2018) Ganyu Gu et al.   Frontiers in Microbiology

Long-term application of manures plus chemical fertilizers sustained high rice yield and improved soil chemical and bacterial properties

(2017) Danmei Chen et al.   EUROPEAN JOURNAL OF AGRONOMY

35 years of manure and chemical fertilizer application alters soil microbial community composition in a Fluvo-aquic soil in Northern China

(2017) Meng Wei et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Agriculture erases climate-driven β-diversity in Neotropical bird communities

(2017) Daniel S. Karp et al.   GLOBAL CHANGE BIOLOGY

Grower Analysis of Organic Matter Amendments in California Orchards

(2017) Sat Darshan S. Khalsa et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review

(2016) Eric Vukicevich et al.   Agronomy for Sustainable Development

Effects of Cover Crop Species and Season on Population Dynamics of Escherichia coli and Listeria innocua in Soil

(2016) Neiunna L. Reed-Jones et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structure of bacterial communities in soil following cover crop and organic fertilizer incorporation

(2016) Adria L. Fernandez et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Inconsistent food safety pressures complicate environmental conservation for California produce growers

(2016) Patrick Baur et al.   CALIFORNIA AGRICULTURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Persistence of Escherichia coli in batch and continuous vermicomposting systems

(2016) Louise Hénault-Ethier et al.   WASTE MANAGEMENT

Soil Health Paradigms and Implications for Disease Management

(2015) Robert P. Larkin   Annual Review of Phytopathology

Soil Conditions That Can Alter Natural Suppression of Escherichia coli O157:H7 in Ohio Specialty Crop Soils

(2015) Michele L. Williams et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Impact of Manure Fertilization on the Abundance of Antibiotic-Resistant Bacteria and Frequency of Detection of Antibiotic Resistance Genes in Soil and on Vegetables at Harvest

(2013) Romain Marti et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant Pathogen Eradication During Composting: A Literature Review

(2013) Kristine M. Wichuk et al.   COMPOST SCIENCE & UTILIZATION

Fate ofEscherichia coliO157:H7 andSalmonella entericain the manure-amended soil-plant ecosystem of fresh vegetable crops: A review

(2013) Duncan Ongeng et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Examination of factors for use as potential predictors of human enteric pathogen survival in soil

(2013) M.C. Erickson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Fate ofEscherichia coliO157:H7 andSalmonellain soil and lettuce roots as affected by potential home gardening practices

(2013) Marilyn C Erickson et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Biotic and Abiotic Soil Properties Influence Survival of Listeria monocytogenes in Soil

(2013) Aude Locatelli et al.   PLoS One

Seasonal variation in functional properties of microbial communities in beech forest soil

(2013) Marianne Koranda et al.   SOIL BIOLOGY & BIOCHEMISTRY

Listeria monocytogenes, a down-to-earth pathogen

(2013) Anne-Laure Vivant et al.   Frontiers in Cellular and Infection Microbiology

Risk Factors for Microbial Contamination in Fruits and Vegetables at the Preharvest Level: A Systematic Review

(2012) SANGSHIN PARK et al.   JOURNAL OF FOOD PROTECTION

Changes in Bacterial Community Structure of Agricultural Land Due to Long-Term Organic and Chemical Amendments

(2012) Vasvi Chaudhry et al.   MICROBIAL ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Impacts of Organic and Conventional Crop Management on Diversity and Activity of Free-Living Nitrogen Fixing Bacteria and Total Bacteria Are Subsidiary to Temporal Effects

(2012) Caroline H. Orr et al.   PLoS One

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effects of mineral fertilizer and organic manure on soil microbial community and diversity

(2009) Wenhui Zhong et al.   PLANT AND SOIL

Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial

(2008) Jonas F. Toljander et al.   FEMS MICROBIOLOGY ECOLOGY

Soil suppressiveness and functional diversity of the soil microflora in organic farming systems

(2008) Joeke Postma et al.   SOIL BIOLOGY & BIOCHEMISTRY