- Home
- Publications
- Publication Search
- Publication Details
Title
Predicting Proteolysis in Complex Proteomes Using Deep Learning
Authors
Keywords
-
Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 22, Issue 6, Pages 3071
Publisher
MDPI AG
Online
2021-03-18
DOI
10.3390/ijms22063071
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening
- (2020) Shaherin Basith et al. MEDICINAL RESEARCH REVIEWS
- Epidermal and Dermal Hallmarks of Photoaging are Prevented by Treatment with Night Serum Containing Melatonin, Bakuchiol, and Ascorbyl Tetraisopalmitate: In Vitro and Ex Vivo Studies
- (2020) Mridvika Narda et al. Dermatology and Therapy
- The proteostasis network and its decline in ageing
- (2019) Mark S. Hipp et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites
- (2019) Fuyi Li et al. BIOINFORMATICS
- Protein secondary structure prediction using neural networks and deep learning: A review
- (2019) Wafaa Wardah et al. COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Deep learning for mining protein data
- (2019) Qiang Shi et al. BRIEFINGS IN BIOINFORMATICS
- iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites
- (2018) Jiangning Song et al. BRIEFINGS IN BIOINFORMATICS
- Structural and compositional diversity of fibrillin microfibrils in human tissues
- (2018) Alexander Eckersley et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Defining tissue proteomes by systematic literature review
- (2018) Sarah A. Hibbert et al. Scientific Reports
- Recurrent Neural Network for Predicting Transcription Factor Binding Sites
- (2018) Zhen Shen et al. Scientific Reports
- Protein secondary structure prediction improved by recurrent neural networks integrated with 2-dimensional convolutional neural networks
- (2018) Yanbu Guo et al. Journal of Bioinformatics and Computational Biology
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- Selective proteolysis by matrix metalloproteinases of photo-oxidised dermal extracellular matrix proteins
- (2018) Sarah A. Hibbert et al. CELLULAR SIGNALLING
- The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
- (2017) Neil D Rawlings et al. NUCLEIC ACIDS RESEARCH
- Knowledge-transfer learning for prediction of matrix metalloprotease substrate-cleavage sites
- (2017) Yanan Wang et al. Scientific Reports
- Active site specificity profiling of the matrix metalloproteinase family: Proteomic identification of 4300 cleavage sites by nine MMPs explored with structural and synthetic peptide cleavage analyses
- (2016) Ulrich Eckhard et al. MATRIX BIOLOGY
- UV-induced inhibition of adipokine production in subcutaneous fat aggravates dermal matrix degradation in human skin
- (2016) Eun Ju Kim et al. Scientific Reports
- Proteotoxic stress and ageing triggers the loss of redox homeostasis across cellular compartments
- (2015) J. Kirstein et al. EMBO JOURNAL
- Loss of fibulin-4 disrupts collagen synthesis and maturation: implications for pathology resulting fromEFEMP2mutations
- (2015) Christina L. Papke et al. HUMAN MOLECULAR GENETICS
- MMP generated matrikines
- (2015) J. Michael Wells et al. MATRIX BIOLOGY
- Ancient collagen reveals evolutionary history of the endemic South American 'ungulates'
- (2015) M. Buckley PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- A potential role for endogenous proteins as sacrificial sunscreens and antioxidants in human tissues
- (2015) Sarah A. Hibbert et al. Redox Biology
- SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity
- (2014) C. N. Magnan et al. BIOINFORMATICS
- DISOPRED3: precise disordered region predictions with annotated protein-binding activity
- (2014) David T. Jones et al. BIOINFORMATICS
- Global Analysis Reveals the Complexity of the Human Glomerular Extracellular Matrix
- (2014) R. Lennon et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- In VivoAssessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates
- (2014) Fabio Sabino et al. MOLECULAR & CELLULAR PROTEOMICS
- Remodelling the extracellular matrix in development and disease
- (2014) Caroline Bonnans et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Basis for substrate recognition and distinction by matrix metalloproteinases
- (2014) Boris I. Ratnikov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of advanced glycation end products in cellular signaling
- (2014) Christiane Ott et al. Redox Biology
- Damage to Skin Extracellular Matrix Induced by UV Exposure
- (2013) Rachel E.B. Watson et al. ANTIOXIDANTS & REDOX SIGNALING
- Elastic fibres in health and disease
- (2013) Andrew K. Baldwin et al. EXPERT REVIEWS IN MOLECULAR MEDICINE
- Scalable web services for the PSIPRED Protein Analysis Workbench
- (2013) Daniel W. A. Buchan et al. NUCLEIC ACIDS RESEARCH
- Sequence-derived structural features driving proteolytic processing
- (2013) Alexander A. Belushkin et al. PROTEOMICS
- PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites
- (2012) Jiangning Song et al. PLoS One
- The action of neutrophil serine proteases on elastin and its precursor
- (2011) Andrea Heinz et al. BIOCHIMIE
- Structural Determinants of Limited Proteolysis
- (2011) Marat D. Kazanov et al. JOURNAL OF PROTEOME RESEARCH
- Molecular aspects of skin ageing
- (2011) Elizabeth C. Naylor et al. MATURITAS
- Photo-oxidation of proteins
- (2011) David I. Pattison et al. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES
- Degradation of tropoelastin by matrix metalloproteinases - cleavage site specificities and release of matrikines
- (2010) Andrea Heinz et al. FEBS Journal
- Low-dose ultraviolet radiation selectively degrades chromophore-rich extracellular matrix components
- (2010) Michael J Sherratt et al. JOURNAL OF PATHOLOGY
- Expression of Cathepsins in Human Skin Photoaging
- (2010) Y. Zheng et al. SKIN PHARMACOLOGY AND PHYSIOLOGY
- Review Article: A new wrinkle on old skin: the role of elastic fibres in skin ageing
- (2010) A. K. Langton et al. INTERNATIONAL JOURNAL OF COSMETIC SCIENCE
- A novel anti-ageing mechanism for retinol: induction of dermal elastin synthesis and elastin fibre formation
- (2010) D. Rossetti et al. INTERNATIONAL JOURNAL OF COSMETIC SCIENCE
- Role of Matrix Metalloproteinases in Skin Ageing
- (2009) Miklós Sárdy CONNECTIVE TISSUE RESEARCH
- Matrix-Degrading Metalloproteinases in Photoaging
- (2009) Taihao Quan et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY SYMPOSIUM PROCEEDINGS
- A p.C217R Mutation in Fibulin-5 from Cutis Laxa Patients Is Associated with Incomplete Extracellular Matrix Formation in a Skin Equivalent Model
- (2008) Stephanie Claus et al. JOURNAL OF INVESTIGATIVE DERMATOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now