Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons
Authors
Keywords
-
Journal
Epigenetics
Volume -, Issue -, Pages 1-13
Publisher
Informa UK Limited
Online
2021-05-13
DOI
10.1080/15592294.2021.1924970
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Genome-wide DNA methylation profiling in human breast tissue by illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray
- (2020) Nan Lin et al. Epigenetics
- Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution
- (2019) Yibin Liu et al. NATURE BIOTECHNOLOGY
- DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS)
- (2019) Giancarlo Bonora et al. PLoS One
- Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics
- (2018) Ovidiu Paun et al. NEW PHYTOLOGIST
- Epigenetic Transgenerational Inheritance of Altered Sperm Histone Retention Sites
- (2018) Millissia Ben Maamar et al. Scientific Reports
- Characterization of Genetic and Epigenetic Variation in Sperm and Red Blood Cells from Adult Hatchery and Natural-Origin Steelhead, Oncorhynchus mykiss
- (2018) Mackenzie R. Gavery et al. G3-Genes Genomes Genetics
- Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA
- (2017) Ksenia Skvortsova et al. Epigenetics & Chromatin
- Profiling genome-wide DNA methylation
- (2016) Wai-Shin Yong et al. Epigenetics & Chromatin
- Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants
- (2015) Fiona Allum et al. Nature Communications
- Role of CpG deserts in the epigenetic transgenerational inheritance of differential DNA methylation regions
- (2014) Michael K Skinner et al. BMC GENOMICS
- Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
- (2014) Michael J Ziller et al. NATURE METHODS
- Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
- (2014) Sébastien A Smallwood et al. NATURE METHODS
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
- (2013) Weilong Guo et al. BMC GENOMICS
- DNA methylome analysis using short bisulfite sequencing data
- (2012) Felix Krueger et al. NATURE METHODS
- Methylome analysis using MeDIP-seq with low DNA concentrations
- (2012) Oluwatosin Taiwo et al. Nature Protocols
- Parallel mechanisms of epigenetic reprogramming in the germline
- (2012) Jamie A. Hackett et al. TRENDS IN GENETICS
- BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
- (2012) Kasper D Hansen et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
- (2011) Shalima S. Nair et al. Epigenetics
- CpG islands and the regulation of transcription
- (2011) A. M. Deaton et al. GENES & DEVELOPMENT
- Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
- (2011) Hongcang Gu et al. Nature Protocols
- Quantitative comparison of genome-wide DNA methylation mapping technologies
- (2010) Christoph Bock et al. NATURE BIOTECHNOLOGY
- Epigenetic transgenerational actions of environmental factors in disease etiology
- (2010) Michael K. Skinner et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain
- (2009) S. Kriaucionis et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started