Fish farm effluents as a source of antibiotic resistance gene dissemination on Jeju Island, South Korea

Characterization and source identification of antibiotic resistance genes in the sediments of an interconnected river-lake system

(2020) Haiyang Chen et al.   ENVIRONMENT INTERNATIONAL

Metagenomic analysis of an urban resistome before and after wastewater treatment

(2020) Felipe Lira et al.   Scientific Reports

Vibrios from the Norwegian marine environment: Characterization of associated antibiotic resistance and virulence genes

(2020) Fredrik Håkonsholm et al.   MicrobiologyOpen

Antibiotics and Food Safety in Aquaculture

(2020) Jiemin Chen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Antibiotics in coastal aquaculture waters: Occurrence and elimination efficiency in oxidative water treatment processes

(2020) Sangki Choi et al.   JOURNAL OF HAZARDOUS MATERIALS

Contributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical Review

(2019) Hassan Waseem et al.   MOLECULES

Analysis of Vibrio harveyi adaptation in sea water microcosms at elevated temperature provides insights into the putative mechanisms of its persistence and spread in the time of global warming

(2019) Itxaso Montánchez et al.   Scientific Reports

Benefits and Inputs From Lactic Acid Bacteria and Their Bacteriocins as Alternatives to Antibiotic Growth Promoters During Food-Animal Production

(2019) Nuria Vieco-Saiz et al.   Frontiers in Microbiology

Virulence-associated genes and antibiotic resistance patterns of Vibrio spp. isolated from cultured marine fishes in Malaysia

(2019) Nurliyana Mohamad et al.   BMC Veterinary Research

Prevalence, Antibiotic-Resistance, and Virulence Characteristics of Vibrio parahaemolyticus in Restaurant Fish Tanks in Seoul, South Korea

(2019) Hyo-Won Jeong et al.   Foodborne Pathogens and Disease

Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)

(2019) Daniela Rosado et al.   Scientific Reports

Prevalence of antibiotic resistance genes from effluent of coastal aquaculture, South Korea

(2018) Hyun Min Jang et al.   ENVIRONMENTAL POLLUTION

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

(2018) Pawel S Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate

(2018) Lisa Nonaka et al.   PLoS One

Use of a filtering process to remove solid waste and antibiotic resistance genes from effluent of a flow-through fish farm

(2018) Young Beom Kim et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Antibiotic resistance increases with local temperature

(2018) Derek R. MacFadden et al.   Nature Climate Change

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification

(2018) Li-Guan Li et al.   Microbiome

Vibrio vulnificus : new insights into a deadly opportunistic pathogen

(2017) Craig Baker-Austin et al.   ENVIRONMENTAL MICROBIOLOGY

Aquatic animals promote antibiotic resistance gene dissemination in water via conjugation: Role of different regions within the zebra fish intestinal tract, and impact on fish intestinal microbiota

(2017) Jialun Fu et al.   MOLECULAR ECOLOGY

Antibiotic growth promoter olaquindox increases pathogen susceptibility in fish by inducing gut microbiota dysbiosis

(2017) Suxu He et al.   Science China-Life Sciences

Human and veterinary pharmaceuticals in the marine environment including fish farms in Korea

(2017) Hee-Young Kim et al.   SCIENCE OF THE TOTAL ENVIRONMENT

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units

(2017) Sarah L. Westcott et al.   mSphere

Aquaculture as yet another environmental gateway to the development and globalisation of antimicrobial resistance

(2016) Felipe C Cabello et al.   LANCET INFECTIOUS DISEASES

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene Transfer

(2016) Christian J. H. von Wintersdorff et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

CARB-17 Family of β-Lactamases Mediates Intrinsic Resistance to Penicillins in Vibrio parahaemolyticus

(2015) Jiachi Chiou et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes

(2015) Jayanta D. Choudhury et al.   MARINE BIOTECHNOLOGY

metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

(2015) Johan Bengtsson-Palme et al.   Molecular Ecology Resources

VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on

(2015) Lihong Chen et al.   NUCLEIC ACIDS RESEARCH

Rapid evaluation and quality control of next generation sequencing data with FaQCs

(2014) Chien-Chi Lo et al.   BMC BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

(2009) Erik Hjerde et al.   BMC GENOMICS

Antibiotics and Antibiotic Resistance Genes in Natural Environments

(2008) J. L. Martinez   SCIENCE