High‐resolution mapping of function and protein binding in an RNA nuclear enrichment sequence

U1 snRNP regulates chromatin retention of noncoding RNAs

(2020) Yafei Yin et al.   NATURE

Gene Architecture and Sequence Composition Underpin Selective Dependency of Nuclear Export of Long RNAs on NXF1 and the TREX Complex

(2020) Binyamin Zuckerman et al.   MOLECULAR CELL

A large-scale binding and functional map of human RNA-binding proteins

(2020) Eric L. Van Nostrand et al.   NATURE

TPR is required for the efficient nuclear export of mRNAs and lncRNAs from short and intron-poor genes

(2020) Eliza S Lee et al.   NUCLEIC ACIDS RESEARCH

Spontaneous in vitro hatching of the human blastocyst: the proteomics of initially hatching cells

(2020) Miriam Almagor et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL

Nuclear retention element recruits U1 snRNP components to restrain spliced lncRNAs in the nucleus

(2019) Sikandar Azam et al.   RNA Biology

A Complex of U1 snRNP with Cleavage and Polyadenylation Factors Controls Telescripting, Regulating mRNA Transcription in Human Cells

(2019) Byung Ran So et al.   MOLECULAR CELL

High‐throughput identification of RNA nuclear enrichment sequences

(2018) Chinmay J Shukla et al.   EMBO JOURNAL

RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease

(2018) Isaac Bishof et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sequence, Structure, and Context Preferences of Human RNA Binding Proteins

(2018) Daniel Dominguez et al.   MOLECULAR CELL

CellProfiler 3.0: Next-generation image processing for biology

(2018) Claire McQuin et al.   PLOS BIOLOGY

Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells

(2018) Yoav Lubelsky et al.   NATURE

Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs

(2018) Alexander F. Palazzo et al.   Frontiers in Genetics

Architecture of the human interactome defines protein communities and disease networks

(2017) Edward L. Huttlin et al.   NATURE

The increasing diversity of functions attributed to the SAFB family of RNA-/DNA-binding proteins

(2016) M. Norman et al.   BIOCHEMICAL JOURNAL

Single molecule approaches for quantifying transcription and degradation rates in intact mammalian tissues

(2016) Keren Bahar Halpern et al.   METHODS

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

Control of mammalian gene expression by selective mRNA export

(2015) Vihandha O. Wickramasinghe et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Consensus 5' Splice Site Motif Inhibits mRNA Nuclear Export

(2015) Eliza S. Lee et al.   PLoS One

Biophysical and biochemical analysis of hnRNP K: arginine methylation, reversible aggregation and combinatorial binding to nucleic acids

(2014) Bodo Moritz et al.   BIOLOGICAL CHEMISTRY

RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites

(2014) Jesse M. Engreitz et al.   CELL

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Promoter directionality is controlled by U1 snRNP and polyadenylation signals

(2013) Albert E. Almada et al.   NATURE

FISH-quant: automatic counting of transcripts in 3D FISH images

(2013) Florian Mueller et al.   NATURE METHODS

Single-molecule mRNA detection and counting in mammalian tissue

(2013) Anna Lyubimova et al.   Nature Protocols

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Multiple factors in the early splicing complex are involved in the nuclear retention of pre-mRNAs in mammalian cells

(2011) Reiko Takemura et al.   GENES TO CELLS

mRNA nuclear export at a glance

(2009) S. R. Carmody et al.   JOURNAL OF CELL SCIENCE

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS