Leveraging synthetic biology approaches in plant hormone research

A memory switch for plant synthetic biology based on the phage ϕC31 integration system

(2020) Joan Miquel Bernabé-Orts et al.   NUCLEIC ACIDS RESEARCH

Specificity in auxin responses is not explained by the promoter preferences of activator ARFs

(2020) Amy Lanctot et al.   PLANT PHYSIOLOGY

A synthetic approach allows rapid characterization of the maize nuclear auxin response circuit

(2020) Román Ramos Báez et al.   PLANT PHYSIOLOGY

Selection and functional identification of a synthetic partial ABA agonist, S7

(2020) Myung Ki Min et al.   Scientific Reports

Molecular Rewiring of the Jasmonate Signaling Pathway to Control Auxin-Responsive Gene Expression

(2020) Ning Li et al.   Cells

Structure-Function Analysis of SMAX1 Reveals Domains that Mediate its Karrikin-Induced Proteolysis and Interaction with the Receptor KAI2

(2020) Aashima Khosla et al.   PLANT CELL

Dual-Reporting Transcriptionally Linked Genetically Encoded Fluorescent Indicators Resolve the Spatiotemporal Coordination of Cytosolic Abscisic Acid and Second Messenger Dynamics in Arabidopsis

(2020) Rainer Waadt et al.   PLANT CELL

Mix, Match, and Maize: A Synthetic System for Maize Nuclear Auxin Response Circuits

(2020) Dhineshkumar Thiruppathi   PLANT PHYSIOLOGY

Phytohormone signaling mechanisms and genetic methods for their modulation and detection

(2020) Rainer Waadt   CURRENT OPINION IN PLANT BIOLOGY

Sensors for the quantification, localization and analysis of the dynamics of plant hormones

(2020) Reika Isoda et al.   PLANT JOURNAL

Visualizing Cellular Gibberellin Levels Using the nlsGPS1 Förster Resonance Energy Transfer (FRET) Biosensor

(2019) Annalisa Rizza et al.   Jove-Journal of Visualized Experiments

Generation of conditional auxin-inducible degron (AID) cells and tight control of degron-fused proteins using the degradation inhibitor auxinole

(2019) Aisha Yesbolatova et al.   METHODS

Rebuilding core abscisic acid signaling pathways of Arabidopsis in yeast

(2019) Moritz Ruschhaupt et al.   EMBO JOURNAL

An improved auxin-inducible degron system preserves native protein levels and enables rapid and specific protein depletion

(2019) Kizhakke Mattada Sathyan et al.   GENES & DEVELOPMENT

Reconstitution of the Jasmonate Signaling Pathway in Plant Protoplasts

(2019) Ning Li et al.   Cells

Synthetic Promoters: Designing the cis Regulatory Modules for Controlled Gene Expression

(2018) Jameel Aysha et al.   MOLECULAR BIOTECHNOLOGY

An E. coli biosensor for screening of cDNA libraries for isochorismate pyruvate lyase-encoding cDNAs

(2018) Yingjie Zhou et al.   MOLECULAR GENETICS AND GENOMICS

Chemical hijacking of auxin signaling with an engineered auxin–TIR1 pair

(2018) Naoyuki Uchida et al.   Nature Chemical Biology

The 6xABRE synthetic promoter enables the spatiotemporal analysis of ABA-mediated transcriptional regulation

(2018) Rui Wu et al.   PLANT PHYSIOLOGY

Synthetic hormone-responsive transcription factors can monitor and re-program plant development

(2018) Arjun Khakhar et al.   eLife

A Plant Biologist’s Toolbox to Study Translation

(2018) Serina M. Mazzoni-Putman et al.   Frontiers in Plant Science

Boolean Computation in Plants Using Post-translational Genetic Control and a Visual Output Signal

(2018) Teresa Cordero et al.   ACS Synthetic Biology

Insights into the Evolution and Function of Auxin Signaling F-Box Proteins in Arabidopsis thaliana Through Synthetic Analysis of Natural Variants

(2017) R. Clay Wright et al.   GENETICS

Bacterial Biosensors for in Vivo Spatiotemporal Mapping of Root Secretion

(2017) Francesco Pini et al.   PLANT PHYSIOLOGY

Insights into the Evolution and Function of Auxin Signaling F-Box Proteins in Arabidopsis thaliana Through Synthetic Analysis of Natural Variants

(2017) R. Clay Wright et al.   GENETICS

Functional analysis of molecular interactions in synthetic auxin response circuits

(2016) Edith Pierre-Jerome et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abscisic acid and other plant hormones: Methods to visualize distribution and signaling

(2015) Rainer Waadt et al.   BIOESSAYS

EIN2-Directed Translational Regulation of Ethylene Signaling in Arabidopsis

(2015) Wenyang Li et al.   CELL

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

(2015) Catharina Merchante et al.   CELL

Auxin-induced degradation dynamics set the pace for lateral root development

(2015) J. M. Guseman et al.   DEVELOPMENT

Agrochemical control of plant water use using engineered abscisic acid receptors

(2015) Sang-Youl Park et al.   NATURE

Reporters for sensitive and quantitative measurement of auxin response

(2015) Che-Yang Liao et al.   NATURE METHODS

Rate Motifs Tune Auxin/Indole-3-Acetic Acid Degradation Dynamics

(2015) Britney L. Moss et al.   PLANT PHYSIOLOGY

Auxin signaling modules regulate maize inflorescence architecture

(2015) Mary Galli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host target modification as a strategy to counter pathogen hijacking of the jasmonate hormone receptor

(2015) Li Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fluorescent hormone biosensor reveals the dynamics of jasmonate signalling in plants

(2015) Antoine Larrieu et al.   Nature Communications

Cell–Cell Communication in Yeast Using Auxin Biosynthesis and Auxin Responsive CRISPR Transcription Factors

(2015) Arjun Khakhar et al.   ACS Synthetic Biology

A large-scale genetic screen for mutants with altered salicylic acid accumulation in Arabidopsis

(2015) Yezhang Ding et al.   Frontiers in Plant Science

A red light-controlled synthetic gene expression switch for plant systems

(2014) Konrad Müller et al.   Molecular BioSystems

Recapitulation of the forward nuclear auxin response pathway in yeast

(2014) Edith Pierre-Jerome et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abscisic acid dynamics in roots detected with genetically encoded FRET sensors

(2014) Alexander M Jones et al.   eLife

FRET-based reporters for the direct visualization of abscisic acid concentration changes and distribution in Arabidopsis

(2014) Rainer Waadt et al.   eLife

Multi-chromatic control of mammalian gene expression and signaling

(2013) Konrad Müller et al.   NUCLEIC ACIDS RESEARCH

A Robust and Sensitive Synthetic Sensor to Monitor the Transcriptional Output of the Cytokinin Signaling Network in Planta

(2013) E. Zurcher et al.   PLANT PHYSIOLOGY

A quantitative ratiometric sensor for time-resolved analysis of auxin dynamics

(2013) Sabrina Wend et al.   Scientific Reports

Quantitative Imaging with Fluorescent Biosensors

(2012) Sakiko Okumoto et al.   Annual Review of Plant Biology

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

(2012) Géraldine Brunoud et al.   NATURE

A Synthetic Approach Reveals Extensive Tunability of Auxin Signaling

(2012) K. A. Havens et al.   PLANT PHYSIOLOGY

Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis

(2012) J. Gallego-Bartolome et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of highly-sensitive microbial biosensors by mutation of the nahR regulatory gene

(2010) Hae Ja Shin   JOURNAL OF BIOTECHNOLOGY

A high-throughput method for isolation of salicylic acid metabolic mutants

(2010) George Marek et al.   Plant Methods

An auxin-based degron system for the rapid depletion of proteins in nonplant cells

(2009) Kohei Nishimura et al.   NATURE METHODS

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis

(2008) Bruno Müller et al.   NATURE