DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development

The conserved and divergent roles of Prdm3 and Prdm16 in zebrafish and mouse craniofacial development

(2020) Lomeli Carpio Shull et al.   DEVELOPMENTAL BIOLOGY

dnmt1 function is required to maintain retinal stem cells within the ciliary marginal zone of the zebrafish eye

(2020) Krista M. Angileri et al.   Scientific Reports

Transgenerational inheritance of impaired larval T cell development in zebrafish

(2020) Norimasa Iwanami et al.   Nature Communications

Deciphering Hi-C: from 3D genome to function

(2019) Siyuan Kong et al.   CELL BIOLOGY AND TOXICOLOGY

TETs Regulate Proepicardial Cell Migration through Extracellular Matrix Organization during Zebrafish Cardiogenesis

(2019) Yahui Lan et al.   Cell Reports

Corrigendum: Inherited DNA methylation primes the establishment of accessible chromatin during genome activation

(2019) Guifen Liu et al.   GENOME RESEARCH

Packaging development: how chromatin controls transcription in zebrafish embryogenesis

(2019) Julia A. Horsfield   BIOCHEMICAL SOCIETY TRANSACTIONS

Effect of Propiconazole on the Lipid Metabolism of Zebrafish Embryos (Danio rerio)

(2019) Miaomiao Teng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo

(2019) Kathrin Laue et al.   Nature Communications

Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development

(2019) Julia Ganz et al.   DEVELOPMENTAL BIOLOGY

Role of epigenetics in zebrafish development

(2019) Satheeswaran Balasubramanian et al.   GENE

Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming

(2018) Patrick J. Murphy et al.   CELL

Sex-specific transcription and DNA methylation profiles of reproductive and epigenetic associated genes in the gonads and livers of breeding zebrafish

(2018) L.V. Laing et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes

(2018) Carol Best et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Ezh2 promotes clock function and hematopoiesis independent of histone methyltransferase activity in zebrafish

(2018) Yingbin Zhong et al.   NUCLEIC ACIDS RESEARCH

Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development

(2018) Lucas J.T. Kaaij et al.   Cell Reports

The zebrafish: A fintastic model for hematopoietic development and disease

(2018) Aniket V. Gore et al.   Wiley Interdisciplinary Reviews-Developmental Biology

The roles of SMYD4 in epigenetic regulation of cardiac development in zebrafish

(2018) Deyong Xiao et al.   PLoS Genetics

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources

(2018) Leyla Ruzicka et al.   NUCLEIC ACIDS RESEARCH

Variant Histone H2afv reprograms DNA methylation during early zebrafish development

(2017) Bhavani Madakashira et al.   Epigenetics

Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes

(2017) Maximilian Witzel et al.   NATURE GENETICS

Heat-induced masculinization in domesticated zebrafish is family-specific and yields a set of different gonadal transcriptomes

(2017) Laia Ribas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental epigenetics in zebrafish

(2017) Vincenzo Cavalieri et al.   Epigenetics & Chromatin

DNA methylation and DNA methyltransferases

(2017) John R. Edwards et al.   Epigenetics & Chromatin

RNA polymerase II pausing modulates hematopoietic stem cell emergence in zebrafish

(2016) Q. Yang et al.   BLOOD

Transforming Growth Factor β Drives Hemogenic Endothelium Programming and the Transition to Hematopoietic Stem Cells

(2016) Rui Monteiro et al.   DEVELOPMENTAL CELL

Tris(1,3-dichloro-2-propyl)phosphate Induces Genome-Wide Hypomethylation within Early Zebrafish Embryos

(2016) David C. Volz et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bisphenol A causes reproductive toxicity, decreasesdnmt1transcription, and reduces global DNA methylation in breeding zebrafish(Danio rerio)

(2016) L. V. Laing et al.   Epigenetics

TET1 and TET3 are essential in induction of Th2-type immunity partly through regulation of IL-4/13A expression in zebrafish model

(2016) Chao Yang et al.   GENE

PRDM16 Suppresses MLL1r Leukemia via Intrinsic Histone Methyltransferase Activity

(2016) Bo Zhou et al.   MOLECULAR CELL

Codon Usage and 3′ UTR Length Determine Maternal mRNA Stability in Zebrafish

(2016) Yuichiro Mishima et al.   MOLECULAR CELL

Forward Genetic Screens in Zebrafish Identify Pre-mRNA-Processing Pathways Regulating Early T Cell Development

(2016) Norimasa Iwanami et al.   Cell Reports

Implication of epigenetics in pancreas development and disease

(2015) Evans Quilichini et al.   BEST PRACTICE & RESEARCH CLINICAL ENDOCRINOLOGY & METABOLISM

Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions

(2015) Darío G. Lupiáñez et al.   CELL

Establishing neural crest identity: a gene regulatory recipe

(2015) M. Simoes-Costa et al.   DEVELOPMENT

Kabuki syndrome genesKMT2DandKDM6A: functional analyses demonstrate critical roles in craniofacial, heart and brain development

(2015) Peter M. Van Laarhoven et al.   HUMAN MOLECULAR GENETICS

DNA methyltransferase 1 functions through C/ebpa to maintain hematopoietic stem and progenitor cells in zebrafish

(2015) Xiaohui Liu et al.   Journal of Hematology & Oncology

Proper Activity of Histone H3 Lysine 4 (H3K4) Methyltransferase Is Required for Morphogenesis during Zebrafish Cardiogenesis

(2015) Jun-Dae Kim et al.   MOLECULES AND CELLS

Insulator dysfunction and oncogene activation in IDH mutant gliomas

(2015) William A. Flavahan et al.   NATURE

GFI1 proteins orchestrate the emergence of haematopoietic stem cells through recruitment of LSD1

(2015) Roshana Thambyrajah et al.   NATURE CELL BIOLOGY

Epigenetic control of intestinal barrier function and inflammation in zebrafish

(2015) Lindsay Marjoram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation

(2015) Varun Narendra et al.   SCIENCE

Overlapping Requirements for Tet2 and Tet3 in Normal Development and Hematopoietic Stem Cell Emergence

(2015) Cheng Li et al.   Cell Reports

Global and cyp19a1a gene specific DNA methylation in gonads of adult rare minnow Gobiocypris rarus under bisphenol A exposure

(2014) Yan Liu et al.   AQUATIC TOXICOLOGY

Ncor2 is required for hematopoietic stem cell emergence by inhibiting Fos signaling in zebrafish

(2014) Y. Wei et al.   BLOOD

RNA polymerase II pausing during development

(2014) B. Gaertner et al.   DEVELOPMENT

Setdb2 controls convergence and extension movements during zebrafish gastrulation by transcriptional regulation of dvr1

(2014) Ting-Ting Du et al.   DEVELOPMENTAL BIOLOGY

Interferon Gamma Signaling Positively Regulates Hematopoietic Stem Cell Emergence

(2014) Suphansa Sawamiphak et al.   DEVELOPMENTAL CELL

The epigenetic factor Kmt2a/Mll1 regulates neural progenitor proliferation and neuronal and glial differentiation

(2014) Yin-Cheng Huang et al.   Developmental Neurobiology

Oceans of opportunity: Exploring vertebrate hematopoiesis in zebrafish

(2014) Kelli J. Carroll et al.   EXPERIMENTAL HEMATOLOGY

Expression patterns of dnmt3aa, dnmt3ab, and dnmt4 during development and fin regeneration in zebrafish

(2014) Kazuya Takayama et al.   GENE EXPRESSION PATTERNS

TET2 Plays an Essential Role in Erythropoiesis by Regulating Lineage-Specific Genes via DNA Oxidative Demethylation in a Zebrafish Model

(2014) L. Ge et al.   MOLECULAR AND CELLULAR BIOLOGY

The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species

(2014) Patricia Heyn et al.   Cell Reports

Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern

(2013) Magdalena E. Potok et al.   CELL

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

Global and gene specific DNA methylation changes during zebrafish development

(2013) Xiefan Fang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Effects of Bisphenol S Exposure on Endocrine Functions and Reproduction of Zebrafish

(2013) Kyunghee Ji et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The methyltransferase SMYD3 mediates the recruitment of transcriptional cofactors at the myostatin and c-Met genes and regulates skeletal muscle atrophy

(2013) V. Proserpio et al.   GENES & DEVELOPMENT

SMYD2 is induced during cell differentiation and participates in early development

(2013) Borja Sesé et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Nodal Promotes mir206 Expression to Control Convergence and Extension Movements During Zebrafish Gastrulation

(2013) Xiuli Liu et al.   Journal of Genetics and Genomics

Smyd1b is required for skeletal and cardiac muscle function in zebrafish

(2013) Huiqing Li et al.   MOLECULAR BIOLOGY OF THE CELL

A network of epigenetic regulators guides developmental haematopoiesis in vivo

(2013) Hsuan-Ting Huang et al.   NATURE CELL BIOLOGY

Neurogenesis in zebrafish – from embryo to adult

(2013) Rebecca Schmidt et al.   Neural Development

Distinct Functional and Temporal Requirements for Zebrafish Hdac1 during Neural Crest-Derived Craniofacial and Peripheral Neuron Development

(2013) Myron S. Ignatius et al.   PLoS One

Epigenetics of the antibody response

(2013) Guideng Li et al.   TRENDS IN IMMUNOLOGY

Histone deacetylase is required for the activation of Wnt/β-catenin signaling crucial for heart valve formation in zebrafish embryos

(2012) Young-Seop Kim et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Prdm3 and Prdm16 are H3K9me1 Methyltransferases Required for Mammalian Heterochromatin Integrity

(2012) Inês Pinheiro et al.   CELL

A Temporal Chromatin Signature in Human Embryonic Stem Cells Identifies Regulators of Cardiac Development

(2012) Sharon L. Paige et al.   CELL

Molecular evolution of zebrafish dnmt3 genes and thermal plasticity of their expression during embryonic development

(2012) Catarina Campos et al.   GENE

Essential Role of IL-4 and IL-4R  Interaction in Adaptive Immunity of Zebrafish: Insight into the Origin of Th2-like Regulatory Mechanism in Ancient Vertebrates

(2012) L.-y. Zhu et al.   JOURNAL OF IMMUNOLOGY

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

HDAC inhibitors in kidney development and disease

(2012) Lauren L. Brilli et al.   PEDIATRIC NEPHROLOGY

Polygenic Sex Determination System in Zebrafish

(2012) Woei Chang Liew et al.   PLoS One

Epigenetic mechanisms in cardiac development and disease

(2011) Marcus Vallaster et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

Epigenetic complexity during the zebrafish mid-blastula transition

(2011) Ingrid S. Andersen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

PRDM proteins: Important players in differentiation and disease

(2011) Cathrine K. Fog et al.   BIOESSAYS

The epigenetic regulator Histone Deacetylase 1 promotes transcription of a core neurogenic programme in zebrafish embryos

(2011) Michael RM Harrison et al.   BMC GENOMICS

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

Protein Kinase D2 Controls Cardiac Valve Formation in Zebrafish by Regulating Histone Deacetylase 5 Activity

(2011) Steffen Just et al.   CIRCULATION

Transcript clearance during the maternal-to-zygotic transition

(2011) Claudia B Walser et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Zebrafish cardiac development requires a conserved secondary heart field

(2011) D. Hami et al.   DEVELOPMENT

Mef2cb regulates late myocardial cell addition from a second heart field-like population of progenitors in zebrafish

(2011) Savo Lazic et al.   DEVELOPMENTAL BIOLOGY

Prepatterning of Developmental Gene Expression by Modified Histones before Zygotic Genome Activation

(2011) Leif C. Lindeman et al.   DEVELOPMENTAL CELL

Epigenetics and its implications for ecotoxicology

(2011) Michiel B. Vandegehuchte et al.   ECOTOXICOLOGY

The predominant protein arginine methyltransferase PRMT1 is critical for zebrafish convergence and extension during gastrulation

(2011) Yun-Jung Tsai et al.   FEBS Journal

Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm

(2011) S.-F. Wu et al.   GENOME RESEARCH

The histone methyltransferase Set7/9 promotes myoblast differentiation and myofibril assembly

(2011) Yazhong Tao et al.   JOURNAL OF CELL BIOLOGY

The myosin-interacting protein SMYD1 is essential for sarcomere organization

(2011) S. Just et al.   JOURNAL OF CELL SCIENCE

Arche de Noé immunologique

(2011) Jean-Pierre Levraud et al.   M S-MEDECINE SCIENCES

Structural and Functional Profiling of the Human Histone Methyltransferase SMYD3

(2011) Kenneth W. Foreman et al.   PLoS One

Smyd3 Is Required for the Development of Cardiac and Skeletal Muscle in Zebrafish

(2011) Tomoaki Fujii et al.   PLoS One

DNA methylation levels in the 5′ flanking region of the vitellogenin I gene in liver and brain of adult zebrafish (Danio rerio)—Sex and tissue differences and effects of 17α-ethinylestradiol exposure

(2010) Marie Strömqvist et al.   AQUATIC TOXICOLOGY

Molecular mechanisms of cranial neural crest cell migration and patterning in craniofacial development

(2010) M. Minoux et al.   DEVELOPMENT

Regulation of oocyte maturation in fish

(2010) Yoshitaka Nagahama et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Uhrf1 and Dnmt1 are required for development and maintenance of the zebrafish lens

(2010) Rachel K. Tittle et al.   DEVELOPMENTAL BIOLOGY

UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications

(2010) Hideharu Hashimoto et al.   Epigenetics

KDM7 is a dual demethylase for histone H3 Lys 9 and Lys 27 and functions in brain development

(2010) Y.-i. Tsukada et al.   GENES & DEVELOPMENT

Inhibition of Histone Deacetylase Expands the Renal Progenitor Cell Population

(2010) E. D. de Groh et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Chromatin signature of embryonic pluripotency is established during genome activation

(2010) Nadine L. Vastenhouw et al.   NATURE

Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development

(2010) Hank H. Qi et al.   NATURE

Blood stem cells emerge from aortic endothelium by a novel type of cell transition

(2010) Karima Kissa et al.   NATURE

Waterborne exposure to fluorotelomer alcohol 6:2 FTOH alters plasma sex hormone and gene transcription in the hypothalamic–pituitary–gonadal (HPG) axis of zebrafish

(2009) Chunsheng Liu et al.   AQUATIC TOXICOLOGY

A genetic screen in zebrafish defines a hierarchical network of pathways required for hematopoietic stem cell emergence

(2009) C. E. Burns et al.   BLOOD

Mta3-NuRD complex is a master regulator for initiation of primitive hematopoiesis in vertebrate embryos

(2009) X. Li et al.   BLOOD

MicroRNAs in development and disease

(2009) AE Erson et al.   CLINICAL GENETICS

Distinct phases of cardiomyocyte differentiation regulate growth of the zebrafish heart

(2009) E. de Pater et al.   DEVELOPMENT

Loss of Dnmt1 catalytic activity reveals multiple roles for DNA methylation during pancreas development and regeneration

(2009) Ryan M. Anderson et al.   DEVELOPMENTAL BIOLOGY

New school in liver development: Lessons from zebrafish

(2009) Jaime Chu et al.   HEPATOLOGY

Dnmt3 and G9a Cooperate for Tissue-specific Development in Zebrafish

(2009) Kunal Rai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Endocrine/paracrine control of zebrafish ovarian development

(2009) Eric Clelland et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

Epigenetic regulation of nervous system development by DNA methylation and histone deacetylation

(2009) Jessica L. MacDonald et al.   PROGRESS IN NEUROBIOLOGY

Organ-specific requirements for Hdac1 in liver and pancreas formation

(2008) Emily S. Noël et al.   DEVELOPMENTAL BIOLOGY

Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafish

(2008) Muhammad Farooq et al.   DEVELOPMENTAL BIOLOGY

Hoxb5b Acts Downstream of Retinoic Acid Signaling in the Forelimb Field to Restrict Heart Field Potential in Zebrafish

(2008) Joshua S. Waxman et al.   DEVELOPMENTAL CELL

Histone Deacetylase Inhibitors Modify Pancreatic Cell Fate Determination and Amplify Endocrine Progenitors

(2008) C. Haumaitre et al.   MOLECULAR AND CELLULAR BIOLOGY

Ezh1 and Ezh2 Maintain Repressive Chromatin through Different Mechanisms

(2008) Raphael Margueron et al.   MOLECULAR CELL

EZH1 Mediates Methylation on Histone H3 Lysine 27 and Complements EZH2 in Maintaining Stem Cell Identity and Executing Pluripotency

(2008) Xiaohua Shen et al.   MOLECULAR CELL

Requirement of protein kinase D1 for pathological cardiac remodeling

(2008) J. Fielitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA