Comparative transcriptomic analysis of the different developmental stages of ovary in red swamp crayfish Procambarus clarkii

Genetic diversity of Procambarus clarkii populations based on mitochondrial DNA and microsatellite markers in different areas of Guangxi, China

(2020) Yizhi Zhong et al.   Mitochondrial DNA Part A

Reproductive pattern and population dynamics of commercial red swamp crayfish (Procambarus clarkii) from China: implications for sustainable aquaculture management

(2019) Shiyu Jin et al.   PeerJ

Transcriptomic information from the ovaries of red swamp crayfish (Procambarus clarkii) provides new insights into development of ovaries and embryos

(2019) Peng-Fei Kang et al.   AQUACULTURE

Effect of sub-chronic dietary L-selenomethionine exposure on reproductive performance of Red Swamp Crayfish, (Procambarus clarkii)

(2019) Aijie Mo et al.   ENVIRONMENTAL POLLUTION

Transcriptome analysis of Procambarus clarkii infected with infectious hypodermal and haematopoietic necrosis virus

(2019) Yan-Ying Nian et al.   FISH & SHELLFISH IMMUNOLOGY

Effects of atrazine on vitellogenesis, steroid levels and lipid peroxidation, in female red swamp crayfish Procambarus clarkii

(2018) Gabriela Romina Silveyra et al.   AQUATIC TOXICOLOGY

Dynamics of PI3K and Hippo signaling pathways during in vitro human follicle activation

(2018) J Grosbois et al.   HUMAN REPRODUCTION

Characterization of Population Genetic Structure of red swamp crayfish, Procambarus clarkii, in China

(2018) Shaokui Yi et al.   Scientific Reports

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Microsatellite evidence of dispersal mechanism of red swamp crayfish (Procambarus clarkii) in the Pearl River basin and implications for its management

(2017) Jinlong Huang et al.   Scientific Reports

Novel Insights into Antiviral Gene Regulation of Red Swamp Crayfish, Procambarus clarkii, Infected with White Spot Syndrome Virus

(2017) Shaokui Yi et al.   Genes

Characteristics of Vibrio parahaemolyticus isolates obtained from crayfish ( Procambarus clarkii ) in freshwater

(2016) Xingxing Dong et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The red swamp crayfish Procambarus clarkii in Europe: Impacts on aquatic ecosystems and human well-being

(2016) Catherine Souty-Grosset et al.   LIMNOLOGICA

Population genetic structure and molecular diversity of the red swamp crayfish in China based on mtDNA COI gene sequences

(2016) Gang Liu et al.   Mitochondrial DNA Part A

In-depth comparative transcriptome analysis of intestines of red swamp crayfish, Procambarus clarkii, infected with WSSV

(2016) Zhiqiang Du et al.   Scientific Reports

The eyestalk transcriptome of red swamp crayfish Procambarus clarkii

(2015) Chiara Manfrin et al.   GENE

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development

(2015) Xian-liang Meng et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Transcriptome Analysis of Red Swamp Crawfish Procambarus clarkii Reveals Genes Involved in Gonadal Development

(2014) Hucheng Jiang et al.   PLoS One

In-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii

(2014) Huaishun Shen et al.   PLoS One

Transcriptome-wide identification and characterization of the Procambarus clarkii microRNAs potentially related to immunity against Spiroplasma eriocheiris infection

(2013) Jiangtao Ou et al.   FISH & SHELLFISH IMMUNOLOGY

Genetic diversity among red swamp crayfish (Procambarus clarkii) populations in the middle and lower reaches of the Yangtze River based on AFLP markers

(2013) B.F. Zhu et al.   GENETICS AND MOLECULAR RESEARCH

Involvement of adipokines, AMPK, PI3K and the PPAR signaling pathways in ovarian follicle development and cancer

(2013) Jolle Dupont et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Proteomic identification of proteins relevant to ovarian development in the red swamp crayfish Procambarus clarkii

(2012) Yan Shui et al.   AQUACULTURE

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Physiological biomarkers of hypoxic stress in red swamp crayfish Procambarus clarkii from field and laboratory experiments

(2012) Christopher P. Bonvillain et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Are antioxidant and transcriptional responses useful for discriminating between chemo- and radiotoxicity of uranium in the crayfish Procambarus clarkii?

(2012) Simone Al Kaddissi et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Thermal games in crayfish depend on establishment of social hierarchies

(2012) G. J. Tattersall et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The underwater acoustic activities of the red swamp crayfish Procambarus clarkii

(2012) Giuseppa Buscaino et al.   JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Population Genetic Structure and Post-Establishment Dispersal Patterns of the Red Swamp Crayfish Procambarus Clarkii in China

(2012) Yanhe Li et al.   PLoS One

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Insights into Eyestalk Ablation Mechanism to Induce Ovarian Maturation in the Black Tiger Shrimp

(2011) Umaporn Uawisetwathana et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Genetic diversity and population structure of the invasive alien red swamp crayfish

(2010) Gen Hua Yue et al.   BIOLOGICAL INVASIONS

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Acute toxicity of chlorantraniliprole to non-target crayfish (Procambarus clarkii) associated with rice-crayfish cropping systems

(2010) Gary C Barbee et al.   PEST MANAGEMENT SCIENCE

Activation of dormant ovarian follicles to generate mature eggs

(2010) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Sensitive and rapid detection of freshwater crustacean Spiroplasmas by ISRs-sequence-targeted species-specific primers

(2008) Keran Bi et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY