Unification of functional annotation descriptions using text mining
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Unification of functional annotation descriptions using text mining
Authors
Keywords
-
Journal
BIOLOGICAL CHEMISTRY
Volume -, Issue -, Pages -
Publisher
Walter de Gruyter GmbH
Online
2021-05-15
DOI
10.1515/hsz-2021-0125
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
- (2021) Leon Weber et al. BIOINFORMATICS
- Improved characterisation of clinical text through ontology-based vocabulary expansion
- (2021) Luke T. Slater et al. Journal of Biomedical Semantics
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining
- (2019) Jinhyuk Lee et al. BIOINFORMATICS
- KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold
- (2019) Takuya Aramaki et al. BIOINFORMATICS
- The MetaCyc database of metabolic pathways and enzymes - a 2019 update
- (2019) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- MGnify: the microbiome analysis resource in 2020
- (2019) Alex L Mitchell et al. NUCLEIC ACIDS RESEARCH
- CDD/SPARCLE: the conserved domain database in 2020
- (2019) Shennan Lu et al. NUCLEIC ACIDS RESEARCH
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- Community challenges in biomedical text mining over 10 years: success, failure and the future
- (2015) Chung-Chi Huang et al. BRIEFINGS IN BIOINFORMATICS
- Survey of Natural Language Processing Techniques in Bioinformatics
- (2015) Zhiqiang Zeng et al. Computational and Mathematical Methods in Medicine
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Data integration in biological research: an overview
- (2015) Vasileios Lapatas et al. Journal of Biological Research-Thessaloniki
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
- (2013) Henrik Nordberg et al. NUCLEIC ACIDS RESEARCH
- TIGRFAMs and Genome Properties in 2013
- (2012) Daniel H. Haft et al. NUCLEIC ACIDS RESEARCH
- Text Mining Improves Prediction of Protein Functional Sites
- (2012) Karin M. Verspoor et al. PLoS One
- IntelliGO: a new vector-based semantic similarity measure including annotation origin
- (2011) Sidahmed Benabderrahmane et al. BMC BIOINFORMATICS
- The BioLexicon: a large-scale terminological resource for biomedical text mining
- (2011) Paul Thompson et al. BMC BIOINFORMATICS
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Protein function annotation by homology-based inference
- (2009) Yaniv Loewenstein et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started