Global transcriptomic profiling in barramundi (Lates calcarifer) from rivers impacted by differing agricultural land uses

Effects of the PPARα agonist WY-14,643 on plasma lipids, enzymatic activities and mRNA expression of lipid metabolism genes in a marine flatfish, Scophthalmus maximus

(2015) R. Urbatzka et al.   AQUATIC TOXICOLOGY

Altered levels of endocrine biomarkers in juvenile barramundi (Lates calcarifer; Bloch) following exposure to commercial herbicide and surfactant formulations

(2015) Frederieke J. Kroon et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Using species sensitivity distribution approach to assess the risks of commonly detected agricultural pesticides to Australia's tropical freshwater ecosystems

(2015) Asoka Pathiratne et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

A long-term assessment of pesticide mixture effects on aquatic invertebrate communities

(2015) Simone Hasenbein et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Altered transcription levels of endocrine associated genes in two fisheries species collected from the Great Barrier Reef catchment and lagoon

(2015) Frederieke J. Kroon et al.   MARINE ENVIRONMENTAL RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptome profile analysis reveals specific signatures of pollutants in Atlantic eels

(2014) Lucie Baillon et al.   ECOTOXICOLOGY

Effects of atrazine on endocrinology and physiology in juvenile barramundi,Lates calcarifer(Bloch)

(2014) Frederieke J. Kroon et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

Bioavailability and fate of sediment-associated trenbolone and estradiol in aquatic systems

(2014) Jodi L. Sangster et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The role of biomarkers in the assessment of aquatic ecosystem health

(2014) Sharon E Hook et al.   Integrated Environmental Assessment and Management

454 pyrosequencing-based analysis of gene expression profiles in the amphipod Melita plumulosa: Transcriptome assembly and toxicant induced changes

(2013) Sharon E. Hook et al.   AQUATIC TOXICOLOGY

Global Transcriptome Profiling Reveals Molecular Mechanisms of Metal Tolerance in a Chronically Exposed Wild Population of Brown Trout

(2013) T. M. Uren Webster et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Phytotoxicity of Four Photosystem II Herbicides to Tropical Seagrasses

(2013) Florita Flores et al.   PLoS One

Insect nicotinic receptor interactions in vivo with neonicotinoid, organophosphorus, and methylcarbamate insecticides and a synergist

(2013) X. Shao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome Alterations Following Developmental Atrazine Exposure in Zebrafish Are Associated with Disruption of Neuroendocrine and Reproductive System Function, Cell Cycle, and Carcinogenesis

(2013) Gregory J. Weber et al.   TOXICOLOGICAL SCIENCES

Toxicity of atrazine and nonylphenol in juvenile rainbow trout (Oncorhynchus mykiss): Effects on general health, disease susceptibility and gene expression

(2012) Lesley K. Shelley et al.   AQUATIC TOXICOLOGY

A Perspective on Modern Pesticides, Pelagic Fish Declines, and Unknown Ecological Resilience in Highly Managed Ecosystems

(2012) Nathaniel L. Scholz et al.   BIOSCIENCE

Reconstitution Studies of Pesticides and Surfactants Exploring the Cause of Estrogenic Activity Observed in Surface Waters of the San Francisco Bay Delta

(2012) Daniel Schlenk et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Immunotoxic effects of environmental toxicants in fish — how to assess them?

(2012) Helmut Segner et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Exposure to atrazine affects the expression of key genes in metabolic pathways integral to energy homeostasis in Xenopus laevis tadpoles

(2011) Renee M. Zaya et al.   AQUATIC TOXICOLOGY

Effects of long-term exposure to simazine in real concentrations on common carp (Cyprinus carpio L.)

(2011) J. Velisek et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Taking Microarrays to the Field: Differential Hepatic Gene Expression of Caged Fathead Minnows from Nebraska Watersheds

(2011) Marlo K. Sellin Jeffries et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

17Beta-estradiol affects the response of complement components and survival of rainbow trout (Oncorhynchus mykiss) challenged by bacterial infection

(2011) Michael Wenger et al.   FISH & SHELLFISH IMMUNOLOGY

Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef

(2011) Stephen E. Lewis et al.   MARINE POLLUTION BULLETIN

Water quality in the inshore Great Barrier Reef lagoon: Implications for long-term monitoring and management

(2011) Britta Schaffelke et al.   MARINE POLLUTION BULLETIN

A bioindicator system for water quality on inshore coral reefs of the Great Barrier Reef

(2011) Katharina E. Fabricius et al.   MARINE POLLUTION BULLETIN

Large-scale pesticide monitoring across Great Barrier Reef catchments – Paddock to Reef Integrated Monitoring, Modelling and Reporting Program

(2011) Rachael Smith et al.   MARINE POLLUTION BULLETIN

A review of sediment and nutrient concentration data from Australia for use in catchment water quality models

(2011) Rebecca Bartley et al.   MARINE POLLUTION BULLETIN

River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon

(2011) Frederieke J. Kroon et al.   MARINE POLLUTION BULLETIN

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Peroxisome proliferator-activated receptors, estrogenic responses and biotransformation system in the liver of salmon exposed to tributyltin and second messenger activator

(2010) Nela Pavlikova et al.   AQUATIC TOXICOLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Linking mechanistic and behavioral responses to sublethal esfenvalerate exposure in the endangered delta smelt; Hypomesus transpacificus (Fam. Osmeridae)

(2009) Richard E Connon et al.   BMC GENOMICS

Stress transcriptomics in fish: A role for genomic cortisol signaling

(2009) Neelakanteswar Aluru et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Hepatic transcriptomic profiles of European flounder (Platichthys flesus) from field sites and computational approaches to predict site from stress gene responses following exposure to model toxicants

(2008) F FALCIANI et al.   AQUATIC TOXICOLOGY

Evaluation of three-year monitoring with biomarkers in fish following the Prestige oil spill (N Spain)

(2008) C. Martínez-Gómez et al.   CHEMOSPHERE

The Synergistic Toxicity of Pesticide Mixtures: Implications for Risk Assessment and the Conservation of Endangered Pacific Salmon

(2008) Cathy A. Laetz et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil

(2008) Kei Nakayama et al.   MARINE POLLUTION BULLETIN

Effects of atrazine on hepatic metabolism and endocrine homeostasis in rainbow trout (Oncorhynchus mykiss)

(2008) Iurgi Salaberria et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY