Imaging Commensal Microbiota and Pathogenic Bacteria in the Gut

Noninvasive PET tracking of post-transplant gut microbiota in living mice

(2020) Yanpu Wang et al.   EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING

Quantification of Bacterial Metabolic Activities in the Gut by d ‐Amino Acid‐Based In Vivo Labeling

(2020) Liyuan Lin et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Microbial–host molecular exchange and its functional consequences in early mammalian life

(2020) Stephanie C. Ganal-Vonarburg et al.   SCIENCE

Acoustic biosensors for ultrasound imaging of enzyme activity

(2020) Anupama Lakshmanan et al.   Nature Chemical Biology

Three‐dimensional Quantitative Imaging of Native Microbiota Distribution in the Gut

(2020) Wei Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Innovations to culturing the uncultured microbial majority

(2020) William H. Lewis et al.   NATURE REVIEWS MICROBIOLOGY

Revealing the in vivo growth and division patterns of mouse gut bacteria

(2020) Liyuan Lin et al.   Science Advances

Fluorescent antibiotics for real-time tracking of pathogenic bacteria

(2020) Lu Miao et al.   Journal of Pharmaceutical Analysis

Highly multiplexed spatial mapping of microbial communities

(2020) Hao Shi et al.   NATURE

Metabolic RNA labeling for probing RNA dynamics in bacteria

(2020) Liying Meng et al.   NUCLEIC ACIDS RESEARCH

Metagenomic engineering of the mammalian gut microbiome in situ

(2019) Carlotta Ronda et al.   NATURE METHODS

Assessing the viability of transplanted gut microbiota by sequential tagging with D-amino acid-based metabolic probes

(2019) Wei Wang et al.   Nature Communications

Mechanisms of Incorporation for D-Amino Acid Probes That Target Peptidoglycan Biosynthesis

(2019) Erkin Kuru et al.   ACS Chemical Biology

Microbiota and the social brain

(2019) Eoin Sherwin et al.   SCIENCE

Metabolic Labeling of Peptidoglycan with NIR-II Dye Enables In Vivo Imaging of Gut Microbiota

(2019) Wei Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Antibody recognition of bacterial surfaces and extracellular polysaccharides

(2019) Caroline Soliman et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

An exclusive metabolic niche enables strain engraftment in the gut microbiota

(2018) Elizabeth Stanley Shepherd et al.   NATURE

Culturing the human microbiota and culturomics

(2018) Jean-Christophe Lagier et al.   NATURE REVIEWS MICROBIOLOGY

Antibiotics-based fluorescent probes for selective labeling of Gram-negative and Gram-positive bacteria in living microbiotas

(2018) Wang Wei et al.   Science China-Chemistry

Stable-Isotope Probing of Human and Animal Microbiome Function

(2018) David Berry et al.   TRENDS IN MICROBIOLOGY

Tracking of Engineered Bacteria In Vivo Using Nonstandard Amino Acid Incorporation

(2018) Pichet Praveschotinunt et al.   ACS Synthetic Biology

Acoustic reporter genes for noninvasive imaging of microorganisms in mammalian hosts

(2018) Raymond W. Bourdeau et al.   NATURE

A tridecaptin-based fluorescent probe for differential staining of Gram-negative bacteria

(2018) Wei Wang et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice

(2017) Jessica L. Mark Welch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating vital surface molecules of symbionts in health and disease

(2017) Jason E. Hudak et al.   Nature Microbiology

Host–pathogen interactions in bacterial meningitis

(2016) Kelly S. Doran et al.   ACTA NEUROPATHOLOGICA

Signals from the gut microbiota to distant organs in physiology and disease

(2016) Bjoern O Schroeder et al.   NATURE MEDICINE

Antimicrobial lipopeptide tridecaptin A1selectively binds to Gram-negative lipid II

(2016) Stephen A. Cochrane et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescent reporter systems for tracking probiotic lactic acid bacteria and bifidobacteria

(2016) José Mª Landete et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Quantitative Imaging of Gut Microbiota Spatial Organization

(2015) Kristen A. Earle et al.   Cell Host & Microbe

In vivo imaging and tracking of host–microbiota interactions via metabolic labeling of gut anaerobic bacteria

(2015) Naama Geva-Zatorsky et al.   NATURE MEDICINE

Uptake of Polymyxin B into Renal Cells

(2014) Kamilia Abdelraouf et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Probing the Penetration of Antimicrobial Polymyxin Lipopeptides into Gram-Negative Bacteria

(2014) Zakuan Z. Deris et al.   BIOCONJUGATE CHEMISTRY

Tracking bacterial pathogens with genetically-encoded reporters

(2014) F.-X. Campbell-Valois et al.   FEBS LETTERS

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing

(2013) D. Berry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Situ Probing of Newly Synthesized Peptidoglycan in Live Bacteria with FluorescentD-Amino Acids

(2012) Erkin Kuru et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

(2011) A. M. Valm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visualization of Sialic Acid Produced on Bacterial Cell Surfaces by Lectin Staining

(2010) Hitomi Kajiwara et al.   MICROBES AND ENVIRONMENTS

How Bacterial Carbohydrates Influence the Adaptive Immune System

(2009) Fikri Y. Avci et al.   Annual Review of Immunology

DNA replication during endospore development in Metabacterium polyspora

(2008) Rebekah J. Ward et al.   MOLECULAR MICROBIOLOGY