Epidemic HI2 Plasmids Mobilising the Carbapenemase Gene blaIMP-4 in Australian Clinical Samples Identified in Multiple Sublineages of Escherichia coli ST216 Colonising Silver Gulls

Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

(2020) Leah W. Roberts et al.   Nature Communications

Genomic profiling of Escherichia coli isolates from bacteraemia patients: a 3-year cohort study of isolates collected at a Sydney teaching hospital

(2020) Priyanka Hastak et al.   Microbial Genomics

Diversity of Hybrid- and Hetero-Pathogenic Escherichia coli and Their Potential Implication in More Severe Diseases

(2020) Ana Carolina de Mello Santos et al.   Frontiers in Cellular and Infection Microbiology

Genomic Characterisation of a Multiple Drug Resistant IncHI2 ST4 Plasmid in Escherichia coli ST744 in Australia

(2020) Tiziana Zingali et al.   Microorganisms

Escherichia coli ST457: an emerging extended-spectrum β-lactam resistant lineage with reservoirs in wildlife and food-producing animals

(2020) Kristina Nesporova et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

IS26 mediate the acquisition of tigecycline resistance gene cluster tmexCD1-toprJ1 by IncHI1B-FIB plasmids in Klebsiella pneumoniae and Klebsiella quasipneumoniae from food market sewage

(2020) Miao Wan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Identification of a Chromosomal Integrated DNA Fragment Containing the rmpA2 and iucABCDiutA Virulence Genes in Klebsiella pneumoniae

(2020) Xuemei Yang et al.   mSphere

Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids

(2020) Max L. Cummins et al.   mSphere

Genomic analysis of trimethoprim-resistant extraintestinal pathogenic Escherichia coli and recurrent urinary tract infections

(2020) Dmitriy Li et al.   Microbial Genomics

Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes

(2019) Vanessa R. Marcelino et al.   BMC BIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Plasmid-Mediated mcr-1 Colistin Resistance in Escherichia coli from a Black Kite in Russia

(2019) Hassan Tarabai et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Wildlife Is Overlooked in the Epidemiology of Medically Important Antibiotic-Resistant Bacteria

(2019) Monika Dolejska et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages

(2019) Amee R. Manges et al.   CLINICAL MICROBIOLOGY REVIEWS

Resistance to critically important antimicrobials in Australian silver gulls (Chroicocephalus novaehollandiae) and evidence of anthropogenic origins

(2019) Shewli Mukerji et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Early emergence of mcr‐ 1‐positive Enterobacteriaceae in gulls from Spain and Portugal

(2019) Christina A. Ahlstrom et al.   Environmental Microbiology Reports

High prevalence and diversity of extended-spectrum β-lactamase and emergence of OXA-48 producing Enterobacterales in wildlife in Catalonia

(2019) Laila Darwich et al.   PLoS One

Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production

(2019) Ethan R. Wyrsch et al.   Microorganisms

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

(2019) Brian P Alcock et al.   NUCLEIC ACIDS RESEARCH

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

(2019) Zhemin Zhou et al.   GENOME RESEARCH

Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital

(2019) A Kizny Gordon et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Characterization of the Complete Nucleotide Sequences of IMP-4-Encoding Plasmids, Belonging to Diverse Inc Families, Recovered from Enterobacteriaceae Isolates of Wildlife Origin

(2018) Monika Dolejska et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genomic analysis of multiple drug resistant Escherichia coli ST58 causing urosepsis

(2018) Jessica McKinnon et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Microbiological surveillance of plasmid mediated colistin resistance in human Enterobacteriaceae isolates in Romagna (Northern Italy): August 2016–July 2017

(2018) F. Del Bianco et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Colonization with Enterobacteriaceae-Producing ESBLs, AmpCs, and OXA-48 in Wild Avian Species, Spain 2015–2016

(2018) Jesús Oteo et al.   Microbial Drug Resistance

Migratory White Stork (Ciconia ciconia): A Potential Vector of the OXA-48-Producing Escherichia coli ST38 Clone in Algeria

(2018) Amira Bouaziz et al.   Microbial Drug Resistance

Evidence for Environmental Dissemination of Antibiotic Resistance Mediated by Wild Birds

(2018) Jiao Wu et al.   Frontiers in Microbiology

Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones

(2018) Louise Roer et al.   mSphere

A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli demonstrates carbapenemase gene outbreaks involving sink sites require novel approaches to infection control

(2018) V Decraene et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Plasmid-mediated resistance is going wild

(2018) Monika Dolejska et al.   PLASMID

Emergence of dominant multidrug-resistant bacterial clades: Lessons from history and whole-genome sequencing

(2018) Elizabeth J. Klemm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anthropogenic environmental drivers of antimicrobial resistance in wildlife

(2018) Benjamin M.C. Swift et al.   SCIENCE OF THE TOTAL ENVIRONMENT

IS26-mediated formation of a virulence and resistance plasmid in Salmonella Enteritidis

(2017) Marcus Ho-yin Wong et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Comparison of imipenem and meropenem antibiotics for the MALDI-TOF MS detection of carbapenemase activity

(2017) Veronika Rotova et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Improvement in routine detection of colistin resistance in E. coli isolated in veterinary diagnostic laboratories

(2017) Eric Jouy et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Carbapenemase-producing enterobacteriaceae recovered from a Spanish river ecosystem

(2017) Núria Piedra-Carrasco et al.   PLoS One

The role of IS 26 in evolution of a derivative of the virulence plasmid of Salmonella enterica serovar Enteritidis which confers multiple drug resistance

(2016) Vanesa García et al.   INFECTION GENETICS AND EVOLUTION

Escherichia colicarrying IncX4 plasmid-mediatedmcr-1andblaCTX-Mgenes in infected migratory Magellanic penguins (Spheniscus magellanicus)

(2016) Fábio P. Sellera et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The colistin resistancemcr-1gene is going wild: Table 1.

(2016) Apostolos Liakopoulos et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Antimicrobial resistance in wildlife

(2016) Marion Vittecoq et al.   JOURNAL OF APPLIED ECOLOGY

Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts

(2016) Andreas Porse et al.   MOLECULAR BIOLOGY AND EVOLUTION

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Isolation and plasmid characterization of carbapenemase (IMP-4) producing Salmonella enterica Typhimurium from cats

(2016) Sam Abraham et al.   Scientific Reports

KPC-Like Carbapenemase-Producing Enterobacteriaceae Colonizing Patients in Europe and Israel

(2015) A. Baraniak et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

High prevalence ofSalmonellaand IMP-4-producing Enterobacteriaceae in the silver gull on Five Islands, Australia

(2015) Monika Dolejska et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on

(2015) Lihong Chen et al.   NUCLEIC ACIDS RESEARCH

Tn6026 and Tn6029 are found in complex resistance regions mobilised by diverse plasmids and chromosomal islands in multiple antibiotic resistant Enterobacteriaceae

(2015) Cameron J. Reid et al.   PLASMID

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Comparative Genomics of an IncA/C Multidrug Resistance Plasmid from Escherichia coli and Klebsiella Isolates from Intensive Care Unit Patients and the Utility of Whole-Genome Sequencing in Health Care Settings

(2014) Tracy H. Hazen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A multinational study of colonization with extended spectrum β-lactamase-producing Enterobacteriaceae in healthcare personnel and family members of carrier patients hospitalized in rehabilitation centres

(2014) A. Adler et al.   CLINICAL MICROBIOLOGY AND INFECTION

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

The Emergence of Bacterial "Hopeful Monsters"

(2014) N. J. Croucher et al.   mBio

Movement of IS26-Associated Antibiotic Resistance Genes Occurs via a Translocatable Unit That Includes a Single IS26 and Preferentially Inserts Adjacent to Another IS26

(2014) C. J. Harmer et al.   mBio

Potential impact of antimicrobial resistance in wildlife, environment and human health

(2014) Hajer Radhouani et al.   Frontiers in Microbiology

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Sequences of Two Related Multiple Antibiotic Resistance Virulence Plasmids Sharing a Unique IS26-Related Molecular Signature Isolated from Different Escherichia coli Pathotypes from Different Hosts

(2013) Carola Venturini et al.   PLoS One

Iron, copper, zinc, and manganese transport and regulation in pathogenic Enterobacteria: correlations between strains, site of infection and the relative importance of the different metal transport systems for virulence

(2013) Gaëlle Porcheron et al.   Frontiers in Cellular and Infection Microbiology

FliC, a Flagellin Protein, Is Essential for the Growth and Virulence of Fish Pathogen Edwardsiella tarda

(2012) Yang He et al.   PLoS One

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Plasmids in Gram negatives: Molecular typing of resistance plasmids

(2011) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Transposons Related to Tn1696 in IncHI2 Plasmids in Multiply Antibiotic Resistant Salmonella enterica Serovar Typhimurium from Australian Animals

(2010) Amy K. Cain et al.   Microbial Drug Resistance

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Distribution of Class 1 Integrons with IS26-Mediated Deletions in Their 3′-Conserved Segments in Escherichia coli of Human and Animal Origin

(2010) Fay E. Dawes et al.   PLoS One

Horizontal Gene Transfer of a ColV Plasmid Has Resulted in a Dominant Avian Clonal Type of Salmonella enterica Serovar Kentucky

(2010) Timothy J. Johnson et al.   PLoS One

Bacterial pathogen evolution: breaking news

(2010) Robert W. Jackson et al.   TRENDS IN GENETICS

Multiple antibiotic resistance gene recruitment onto the enterohemorrhagic Escherichia coli virulence plasmid

(2009) Carola Venturini et al.   FASEB JOURNAL