Genome sequence and evolution of Betula platyphylla

Species determination and phylogenetic relationships of the genus Betula inferred from multiple chloroplast and nuclear regions reveal the high methyl salicylate-producing ability of the ancestor

(2020) Kiran Singewar et al.   TREES-STRUCTURE AND FUNCTION

Fast and accurate long-read assembly with wtdbg2

(2019) Jue Ruan et al.   NATURE METHODS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

(2017) Jarkko Salojärvi et al.   NATURE GENETICS

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Heatmapper: web-enabled heat mapping for all

(2016) Sasha Babicki et al.   NUCLEIC ACIDS RESEARCH

FinisherSC: a repeat-aware tool for upgradingde novoassembly using long reads

(2015) Ka-Kit Lam et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Medicinal plants of the genus Betula—Traditional uses and a phytochemical–pharmacological review

(2015) Subha Rastogi et al.   JOURNAL OF ETHNOPHARMACOLOGY

Designing Microarray and RNA-Seq Experiments for Greater Systems Biology Discovery in Modern Plant Genomics

(2015) Chuanping Yang et al.   Molecular Plant

ALLMAPS: robust scaffold ordering based on multiple maps

(2015) Haibao Tang et al.   GENOME BIOLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Membrane rigidification functions upstream of the MEKK1-MKK2-MPK4 cascade during cold acclimation inArabidopsis thaliana

(2014) Tomoyuki Furuya et al.   FEBS LETTERS

Functional characterization ofCCRin birch (Betula platyphylla×Betula pendula) through overexpression and suppression analysis

(2014) Wenbo Zhang et al.   PHYSIOLOGIA PLANTARUM

Cold acclimation-induced freezing tolerance ofMedicago truncatulaseedlings is negatively regulated by ethylene

(2014) Mingui Zhao et al.   PHYSIOLOGIA PLANTARUM

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Tc1-like transposable elements in plant genomes

(2014) Yuan Liu et al.   Mobile DNA

Syringyl-Rich Lignin Renders Poplars More Resistant to Degradation by Wood Decay Fungi

(2013) Oleksandr Skyba et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

(2013) Guojun Yang   BMC BIOINFORMATICS

MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum

(2013) Sarah M Schmidt et al.   BMC GENOMICS

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Amborella Genome and the Evolution of Flowering Plants

(2013) et al.   SCIENCE

Living at the margin of the retreating Fennoscandian Ice Sheet: The early Mesolithic sites at Aareavaara, northernmost Sweden

(2012) Per Möller et al.   HOLOCENE

The MEKK1-MKK1/MKK2-MPK4 Kinase Cascade Negatively Regulates Immunity Mediated by a Mitogen-Activated Protein Kinase Kinase Kinase in Arabidopsis

(2012) Q. Kong et al.   PLANT CELL

The genome of Prunus mume

(2012) Qixiang Zhang et al.   Nature Communications

Screening synteny blocks in pairwise genome comparisons through integer programming

(2011) Haibao Tang et al.   BMC BIOINFORMATICS

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE