Mechanistic strategies of microbial communities regulating lignocellulose deconstruction in a UK salt marsh

Are drivers of root-associated fungal community structure context specific?

(2019) A. Khuzaim Alzarhani et al.   ISME Journal

Potential roles of marine fungi in the decomposition process of standing stems and leaves of Spartina maritima

(2019) Maria da Luz Calado et al.   MYCOLOGIA

Mineral protection regulates long-term global preservation of natural organic carbon

(2019) Jordon D. Hemingway et al.   NATURE

Comparison of enzymatic activities and proteomic profiles of Butyrivibrio fibrisolvens grown on different carbon sources

(2019) Hana Sechovcová et al.   Proteome Science

Vascular Plants Are Globally Significant Contributors to Marine Carbon Fluxes and Sinks

(2019) Simon M. Cragg et al.   Annual Review of Marine Science

Discovery, activity and characterisation of an AA10 lytic polysaccharide oxygenase from the shipworm symbiont Teredinibacter turnerae

(2019) Claire. A. Fowler et al.   Biotechnology for Biofuels

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate

(2018) Larisa Cortes-Tolalpa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies

(2018) Anna M. Alessi et al.   Biotechnology for Biofuels

Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility

(2018) Wagner R. de Souza et al.   NEW PHYTOLOGIST

Centers of organic carbon burial and oxidation at the land-ocean interface

(2018) Thomas S. Bianchi et al.   ORGANIC GEOCHEMISTRY

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing

(2018) Roland C. Wilhelm et al.   ISME Journal

Characterizing blue carbon stocks in Thalassia testudinum meadows subjected to different phosphorus supplies: A lignin biomarker approach

(2018) Savanna C. Barry et al.   LIMNOLOGY AND OCEANOGRAPHY

Structure and function of a glycoside hydrolase family 8 endoxylanase from Teredinibacter turnerae

(2018) Claire A. Fowler et al.   Acta Crystallographica Section D-Structural Biology

Influences of Different Halophyte Vegetation on Soil Microbial Community at Temperate Salt Marsh

(2017) Doongar R. Chaudhary et al.   MICROBIAL ECOLOGY

Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities

(2017) Anna M. Alessi et al.   Scientific Reports

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Lignocellulose degradation mechanisms across the Tree of Life

(2015) Simon M Cragg et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Unlocking the potential of lignocellulosic biomass through plant science

(2015) Poppy E. Marriott et al.   NEW PHYTOLOGIST

Large Natural pH, CO2 and O2 Fluctuations in a Temperate Tidal Salt Marsh on Diel, Seasonal, and Interannual Time Scales

(2014) Hannes Baumann et al.   Estuaries and Coasts

The Acetyl Bromide Method Is Faster, Simpler and Presents Best Recovery of Lignin in Different Herbaceous Tissues than Klason and Thioglycolic Acid Methods

(2014) Flavia Carolina Moreira-Vilar et al.   PLoS One

Range of cell-wall alterations enhance saccharification inBrachypodium distachyonmutants

(2014) Poppy E. Marriott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Lignocellulose-responsive bacteria in a southern California salt marsh identified by stable isotope probing

(2014) Lindsay E. Darjany et al.   Frontiers in Microbiology

Feasibility test of utilizing Saccharophagus degradans 2-40T as the source of crude enzyme for the saccharification of lignocellulose

(2013) Young Hoon Jung et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Carbohydrate-binding modules (CBMs) revisited: reduced amount of water counterbalances the need for CBMs

(2013) Anikó Várnai et al.   Biotechnology for Biofuels

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Salt Marsh Primary Production and Its Responses to Relative Sea Level and Nutrients in Estuaries at Plum Island, Massachusetts, and North Inlet, South Carolina, USA

(2013) James Morris et al.   OCEANOGRAPHY

Decomposition and nutrient dynamics in a Spartina alterniflora marsh of the Bahia Blanca estuary, Argentina

(2012) Vanesa L Negrin et al.   BRAZILIAN JOURNAL OF OCEANOGRAPHY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan

(2012) D. Chiniquy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbon sequestration in wetland dominated coastal systems—a global sink of rapidly diminishing magnitude

(2012) Charles S Hopkinson et al.   Current Opinion in Environmental Sustainability

Complex Expression of the Cellulolytic Transcriptome of Saccharophagus degradans

(2011) Haitao Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Decomposition and nutrient release in halophytes of a Mediterranean salt marsh

(2011) M.P. Simões et al.   AQUATIC BOTANY

A blueprint for blue carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO2

(2011) Elizabeth Mcleod et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Paleoreconstruction of estuarine sediments reveal human-induced weakening of coastal carbon sinks

(2011) Peter I. Macreadie et al.   GLOBAL CHANGE BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

What do we need to assess the sustainability of the tidal salt marsh carbon sink?

(2011) Gail L. Chmura   OCEAN & COASTAL MANAGEMENT

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Net Primary Productivity of Spartina densiflora Brong in an SW Atlantic Coastal Salt Marsh

(2010) Gabriela González Trilla et al.   Estuaries and Coasts

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comprehensive Compositional Analysis of Plant Cell Walls (Lignocellulosic biomass) Part I: Lignin

(2010) Cliff E. Foster et al.   Jove-Journal of Visualized Experiments

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Aerial and detritus production of the cordgrass Spartina densiflora in a southwestern Atlantic salt marsh

(2009) Federico Vera et al.   Botany

Feruloylation in Grasses: Current and Future Perspectives

(2009) Marcia M. de O. Buanafina   Molecular Plant

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

(2008) Ronald M. Weiner et al.   PLoS Genetics