Graph Algorithms for Mixture Interpretation

Numt identification and removal with RtN!

(2020) August E Woerner et al.   BIOINFORMATICS

The lot-to-lot variability in the mitochondrial genome of controls

(2020) Jennifer Churchill Cihlar et al.   Forensic Science International-Genetics

MVC: an integrated mitochondrial variant caller for forensics

(2019) C. Roth et al.   Australian Journal of Forensic Sciences

ExpansionHunter: A sequence-graph based tool to analyze variation in short tandem repeat regions

(2019) Egor Dolzhenko et al.   BIOINFORMATICS

Haplotype-aware graph indexes

(2019) Jouni Sirén et al.   BIOINFORMATICS

A novel phylogenetic approach for de novo discovery of putative nuclear mitochondrial (pNumt) haplotypes

(2019) Utpal Smart et al.   Forensic Science International-Genetics

Validation of NGS for mitochondrial DNA casework at the FBI Laboratory

(2019) Michael D. Brandhagen et al.   Forensic Science International-Genetics

Pronounced somatic bottleneck in mitochondrial DNA of human hair

(2019) Alison Barrett et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Massively parallel sequencing-enabled mixture analysis of mitochondrial DNA samples

(2018) Jennifer D. Churchill et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Bioinformatic removal of NUMT-associated variants in mitotiling next-generation sequencing data from whole blood samples

(2018) Joseph David Ring et al.   ELECTROPHORESIS

Next generation database search algorithm for forensic mitogenome analyses

(2018) Nicole Huber et al.   Forensic Science International-Genetics

Variation graph toolkit improves read mapping by representing genetic variation in the reference

(2018) Erik Garrison et al.   NATURE BIOTECHNOLOGY

Probabilistic genotyping software: An overview

(2018) Michael D. Coble et al.   Forensic Science International-Genetics

How many individuals share a mitochondrial genome?

(2018) Mikkel M. Andersen et al.   PLoS Genetics

NumtS colonization in mammalian genomes

(2017) F. M. Calabrese et al.   Scientific Reports

Hairy matters: MtDNA quantity and sequence variation along and among human head hairs

(2016) Stijn Desmyter et al.   Forensic Science International-Genetics

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor

(2016) Rosanna Clima et al.   NUCLEIC ACIDS RESEARCH

Improved genome inference in the MHC using a population reference graph

(2015) Alexander Dilthey et al.   NATURE GENETICS

Rcpp: SeamlessRandC++Integration

(2015) Dirk Eddelbuettel et al.   Journal of Statistical Software

High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq

(2014) Jonathan L. King et al.   Forensic Science International-Genetics

The genomic landscape of polymorphic human nuclear mitochondrial insertions

(2014) Gargi Dayama et al.   NUCLEIC ACIDS RESEARCH

Tissue-specific mitochondrial heteroplasmy at position 16,093 within the same individual

(2013) Kaarel Krjutškov et al.   CURRENT GENETICS

Primates and mouse NumtS in the UCSC Genome Browser

(2012) Francesco Maria Calabrese et al.   BMC BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Forensic identification of an individual in complex DNA mixtures

(2010) Lev Voskoboinik et al.   Forensic Science International-Genetics

SAM: String-based sequence search algorithm for mitochondrial DNA database queries

(2010) Alexander Röck et al.   Forensic Science International-Genetics

Interpreting Y chromosome STR haplotype mixture

(2010) Jianye Ge et al.   Legal Medicine

Comments on “Interpreting Y chromosome STR haplotype mixture”

(2010) Jianye Ge et al.   Legal Medicine

A discussion of the merits of random man not excluded and likelihood ratios

(2008) John Buckleton et al.   Forensic Science International-Genetics