Coding of Non-coding RNA: Insights Into the Regulatory Functions of Pri-MicroRNA-Encoded Peptides in Plants

ncEP: a manually curated database for experimentally validated ncRNA-encoded proteins or peptides

(2020) Haizhou Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Pervasive functional translation of noncanonical human open reading frames

(2020) Jin Chen et al.   SCIENCE

Internalization of miPEP165a into Arabidopsis Roots Depends on both Passive Diffusion and Endocytosis-Associated Processes

(2020) Mélanie Ormancey et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Large-scale Discovery of Non-conventional Peptides in Maize and Arabidopsis Through an Integrated Peptidogenomic Pipeline

(2020) Shunxi Wang et al.   Molecular Plant

An miRNA-encoded small peptide, vvi-miPEP171d1, regulates adventitious root formation

(2020) Qiu-ju Chen et al.   PLANT PHYSIOLOGY

uORF Shuffling Fine-Tunes Gene Expression at a Deep Level of the Process

(2020) Yukio Kurihara   Plants-Basel

The new function of circRNA: translation

(2020) Y. Shi et al.   Clinical & Translational Oncology

Translation of small downstream ORFs enhances translation of canonical main open reading frames

(2020) Qiushuang Wu et al.   EMBO JOURNAL

Small But Powerful: MicroRNA-Derived Peptides Promote Grape Adventitious Root Formation

(2020) Magdalena Julkowska   PLANT PHYSIOLOGY

Noncoding but Coding: Pri-miRNA into the Action

(2020) Ashish Prasad et al.   TRENDS IN PLANT SCIENCE

Plant microRNAs: Biogenesis, Homeostasis, and Degradation

(2019) Junli Wang et al.   Frontiers in Plant Science

Characterization and cloning of grape circular RNAs identified the cold resistance-related Vv-circATS1

(2019) Zhen Gao et al.   PLANT PHYSIOLOGY

How are circRNAs translated by non-canonical initiation mechanisms?

(2019) Leïla Halidou Diallo et al.   BIOCHIMIE

Hormone-like peptides and small coding genes in plant stress signaling and development

(2019) Fuminori Takahashi et al.   CURRENT OPINION IN PLANT BIOLOGY

Cytokinin signaling in plant development

(2018) Joseph J. Kieber et al.   DEVELOPMENT

AtPep3 is a hormone-like peptide that plays a role in the salinity stress tolerance of plants

(2018) Kentaro Nakaminami et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signaling Peptides and Receptors Coordinating Plant Root Development

(2018) Eunkyoo Oh et al.   TRENDS IN PLANT SCIENCE

The Pivotal Role of Ethylene in Plant Growth

(2018) Marieke Dubois et al.   TRENDS IN PLANT SCIENCE

The Biogenesis, Functions, and Challenges of Circular RNAs

(2018) Xiang Li et al.   MOLECULAR CELL

A small peptide modulates stomatal control via abscisic acid in long-distance signalling

(2018) Fuminori Takahashi et al.   NATURE

Genome editing of upstream open reading frames enables translational control in plants

(2018) Huawei Zhang et al.   NATURE BIOTECHNOLOGY

Look Closely, the Beautiful May Be Small: Precursor-Derived Peptides in Plants

(2018) Vilde Olsson et al.   Annual Review of Plant Biology

Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in Arabidopsis thaliana

(2018) Sjors van der Horst et al.   RNA

Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis

(2017) Ivano Legnini et al.   MOLECULAR CELL

A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth

(2017) Jin-Zhou Huang et al.   MOLECULAR CELL

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype

(2017) Pamela A. Ribone et al.   PLANT PHYSIOLOGY

Small but Mighty: Functional Peptides Encoded by Small ORFs in Plants

(2017) Polly Yingshan Hsu et al.   PROTEOMICS

Long-distance peptide signaling essential for nutrient homeostasis in plants

(2016) Satoru Okamoto et al.   CURRENT OPINION IN PLANT BIOLOGY

CLE peptides and their signaling pathways in plant development

(2016) Yasuka L. Yamaguchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Use of microRNA-encoded peptide miPEP172c to stimulate nodulation in soybean

(2016) Jean-Malo Couzigou et al.   NEW PHYTOLOGIST

A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle

(2016) B. R. Nelson et al.   SCIENCE

Commentary: Primary Transcripts of microRNAs Encode Regulatory Peptides

(2016) Shuo Lv et al.   Frontiers in Plant Science

A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance

(2015) Douglas M. Anderson et al.   CELL

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

Peptide signalling during the pollen tube journey and double fertilization

(2015) Li-Jia Qu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Primary transcripts of microRNAs encode regulatory peptides

(2015) Dominique Lauressergues et al.   NATURE

The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions

(2015) Patrizia Tavormina et al.   PLANT CELL

An Upstream Open Reading Frame Is Essential for Feedback Regulation of Ascorbate Biosynthesis in Arabidopsis

(2015) William A. Laing et al.   PLANT CELL

Coding function for non-coding RNA in plants—insights from miRNA encoded peptide (miPEP)

(2015) Long Wang et al.   Science China-Life Sciences

Posttranslationally Modified Small-Peptide Signals in Plants

(2014) Yoshikatsu Matsubayashi   Annual Review of Plant Biology

Emerging evidence for functional peptides encoded by short open reading frames

(2014) Shea J. Andrews et al.   NATURE REVIEWS GENETICS

Efficient backsplicing produces translatable circular mRNAs

(2014) Yang Wang et al.   RNA

Long non-coding RNAs as a source of new peptides

(2014) Jorge Ruiz-Orera et al.   eLife

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes

(2014) Sebastiaan van Heesch et al.   GENOME BIOLOGY

Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins

(2013) Mitchell Guttman et al.   CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Regulation of plant translation by upstream open reading frames

(2013) Albrecht G. von Arnim et al.   PLANT SCIENCE

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

ZmPep1, an Ortholog of Arabidopsis Elicitor Peptide 1, Regulates Maize Innate Immunity and Enhances Disease Resistance

(2011) A. Huffaker et al.   PLANT PHYSIOLOGY

PEPR2 Is a Second Receptor for the Pep1 and Pep2 Peptides and Contributes to Defense Responses in Arabidopsis

(2010) Y. Yamaguchi et al.   PLANT CELL

Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis

(2010) Y. Matsuzaki et al.   SCIENCE

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells

(2009) Satohiro Okuda et al.   NATURE