Accumulation of cis- and trans-regulatory variations is associated with phenotypic divergence of a complex trait between yeast species

Independent evolution of transcript abundance and gene regulatory dynamics

(2020) Gat Krieger et al.   GENOME RESEARCH

Molecular and evolutionary processes generating variation in gene expression

(2020) Mark S. Hill et al.   NATURE REVIEWS GENETICS

Trans Effects on Gene Expression Can Drive Omnigenic Inheritance

(2019) Xuanyao Liu et al.   CELL

Thinking About the Evolution of Complex Traits in the Era of Genome-Wide Association Studies

(2019) Guy Sella et al.   Annual Review of Genomics and Human Genetics

Tissue-Specific cis-Regulatory Divergence Implicates eloF in Inhibiting Interspecies Mating in Drosophila

(2018) Peter A. Combs et al.   CURRENT BIOLOGY

Contrasting evolutionary genome dynamics between domesticated and wild yeasts

(2017) Jia-Xing Yue et al.   NATURE GENETICS

ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

(2015) Gabriel E. Zentner et al.   Nature Communications

Heterochronic Meiotic Misexpression in an Interspecific Yeast Hybrid

(2014) Devjanee Swain Lenz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes

(2014) Alberto Santos et al.   NUCLEIC ACIDS RESEARCH

Rare Variants in Hypermutable Genes Underlie Common Morphology and Growth Traits in Wild Saccharomyces paradoxus

(2013) J. I. Roop et al.   GENETICS

Evolution at two levels of gene expression in yeast

(2013) C. G. Artieri et al.   GENOME RESEARCH

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems

(2013) James E. DiCarlo et al.   NUCLEIC ACIDS RESEARCH

Mitotic Exit and Separation of Mother and Daughter Cells

(2012) Eric L. Weiss   GENETICS

The Regulation of Filamentous Growth in Yeast

(2012) Paul J. Cullen et al.   GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids

(2012) Xiaoli Shi et al.   Nature Communications

YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities

(2011) C. G. de Boer et al.   NUCLEIC ACIDS RESEARCH

Epigenome characterization at single base-pair resolution

(2011) J. G. Henikoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus

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Natural selection on cis and trans regulation in yeasts

(2010) J. J. Emerson et al.   GENOME RESEARCH

Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences

(2010) Itay Tirosh et al.   Molecular Systems Biology

High-resolution transcription atlas of the mitotic cell cycle in budding yeast

(2010) Marina V Granovskaia et al.   GENOME BIOLOGY

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

(2009) I. Tirosh et al.   SCIENCE

Daughter-Specific Transcription Factors Regulate Cell Size Control in Budding Yeast

(2009) Stefano Di Talia et al.   PLOS BIOLOGY

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE

Regulatory changes underlying expression differences within and between Drosophila species

(2008) Patricia J Wittkopp et al.   NATURE GENETICS