Analysis of a Methanogen and an Actinobacterium Dominating the Thermophilic Microbial Community of an Electromethanogenic Biocathode

KEGG Mapper for inferring cellular functions from protein sequences

(2019) Minoru Kanehisa et al.   PROTEIN SCIENCE

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA

(2019) N. L. Costa et al.   mBio

Mediator-free enzymatic electrosynthesis of formate by the Methanococcus maripaludis heterodisulfide reductase supercomplex

(2018) Michael Lienemann et al.   BIORESOURCE TECHNOLOGY

Hybrid solar-to-methane conversion system with a Faradaic efficiency of up to 96%

(2018) Qian Fu et al.   Nano Energy

High-pressure thermophilic electromethanogenic system producing methane at 5 MPa, 55°C

(2017) Hajime Kobayashi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Metatranscriptomics Supports the Mechanism for Biocathode Electroautotrophy by “ Candidatus Tenderia electrophaga”

(2017) Brian J. Eddie et al.   mSystems

Metabolic Reconstruction and Modeling Microbial Electrosynthesis

(2017) Christopher W. Marshall et al.   Scientific Reports

Enhanced microbial electrosynthesis by using defined co-cultures

(2016) Jörg S Deutzmann et al.   ISME Journal

Bioelectrochemical Power-to-Gas: State of the Art and Future Perspectives

(2016) Florian Geppert et al.   TRENDS IN BIOTECHNOLOGY

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Selective microbial electrosynthesis of methane by a pure culture of a marine lithoautotrophic archaeon

(2015) Pascal F. Beese-Vasbender et al.   BIOELECTROCHEMISTRY

Sealer: a scalable gap-closing application for finishing draft genomes

(2015) Daniel Paulino et al.   BMC BIOINFORMATICS

Electrochemical characterization of direct electron uptake in electrical microbially influenced corrosion of iron by the lithoautotrophic SRB Desulfopila corrodens strain IS4

(2015) Pascal F. Beese-Vasbender et al.   ELECTROCHIMICA ACTA

Bioelectrochemical Analyses of the Development of a Thermophilic Biocathode Catalyzing Electromethanogenesis

(2015) Qian Fu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

(2015) Duy Tin Truong et al.   NATURE METHODS

Metaproteomic evidence of changes in protein expression following a change in electrode potential in a robust biocathode microbiome

(2015) Dagmar H. Leary et al.   PROTEOMICS

Extracellular Enzymes Facilitate Electron Uptake in Biocorrosion and Bioelectrosynthesis

(2015) Jörg S. Deutzmann et al.   mBio

Methanobacterium Dominates Biocathodic Archaeal Communities in Methanogenic Microbial Electrolysis Cells

(2015) Michael Siegert et al.   ACS Sustainable Chemistry & Engineering

A Previously Uncharacterized, Nonphotosynthetic Member of the Chromatiaceae Is the Primary CO2-Fixing Constituent in a Self-Regenerating Biocathode

(2014) Zheng Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Hydrogenase-independent uptake and metabolism of electrons by the archaeon Methanococcus maripaludis

(2014) Svenja T Lohner et al.   ISME Journal

Bio-electrochemical conversion of carbon dioxide to methane in geological storage reservoirs

(2013) Kozo Sato et al.   ENERGY CONVERSION AND MANAGEMENT

Microbial Community Analysis of a Methane-Producing Biocathode in a Bioelectrochemical System

(2013) Mieke C. A. A. Van Eerten-Jansen et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

Functional responses of methanogenic archaea to syntrophic growth

(2012) Christopher B Walker et al.   ISME Journal

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria

(2012) H. K. Carlson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of BacA in Lipopolysaccharide Synthesis, Peptide Transport, and Nodulation by Rhizobium sp. Strain NGR234

(2011) S. Ardissone et al.   JOURNAL OF BACTERIOLOGY

Comparative Proteomic Analysis of Methanothermobacter themautotrophicus ΔH in Pure Culture and in Co-Culture with a Butyrate-Oxidizing Bacterium

(2011) Miho Enoki et al.   PLoS One

mathFISH, a Web Tool That Uses Thermodynamics-Based Mathematical Models forIn SilicoEvaluation of Oligonucleotide Probes for FluorescenceIn SituHybridization

(2010) L. Safak Yilmaz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis

(2009) Qiangwei Xia et al.   BMC MICROBIOLOGY

Direct Biological Conversion of Electrical Current into Methane by Electromethanogenesis

(2009) Shaoan Cheng et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Roles of Coenzyme F420-Reducing Hydrogenases and Hydrogen- and F420-Dependent Methylenetetrahydromethanopterin Dehydrogenases in Reduction of F420 and Production of Hydrogen during Methanogenesis

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Global Responses of Methanococcus maripaludis to Specific Nutrient Limitations and Growth Rate

(2008) E. L. Hendrickson et al.   JOURNAL OF BACTERIOLOGY

Comparative transcriptome analysis of responses of Methanothermobacter thermautotrophicus to different environmental stimuli

(2007) Souichiro Kato et al.   ENVIRONMENTAL MICROBIOLOGY