New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh

Elevated nutrient inputs to marshes differentially impact carbon and nitrogen cycling in two northern Gulf of Mexico saltmarsh plants

(2020) Taylor C. Ledford et al.   BIOGEOCHEMISTRY

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Variation in ecosystem carbon dynamics of saltwater marshes in the northern Gulf of Mexico

(2018) Gregory Starr et al.   WETLANDS ECOLOGY AND MANAGEMENT

Community Composition of Nitrous Oxide-Related Genes in Salt Marsh Sediments Exposed to Nitrogen Enrichment

(2018) John H. Angell et al.   Frontiers in Microbiology

Salt marsh sediment bacterial communities maintain original population structure after transplantation across a latitudinal gradient

(2018) Angus Angermeyer et al.   PeerJ

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Rhizosphere Microbial Communities of Spartina alterniflora and Juncus roemerianus From Restored and Natural Tidal Marshes on Deer Island, Mississippi

(2018) Olga V. Mavrodi et al.   Frontiers in Microbiology

Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes

(2017) Julian Damashek et al.   Estuaries and Coasts

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Salt Marsh Denitrification Provides a Significant Nitrogen Sink in Barnegat Bay, New Jersey

(2017) David J. Velinsky et al.   JOURNAL OF COASTAL RESEARCH

Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment

(2017) Daniel F. R. Cleary et al.   Marine Ecology-An Evolutionary Perspective

Lineage overwhelms environmental conditions in determining rhizosphere bacterial community structure in a cosmopolitan invasive plant

(2017) Jennifer L. Bowen et al.   Nature Communications

The roles of the hybrid cluster protein, Hcp and its reductase, Hcr, in high affinity nitric oxide reduction that protects anaerobic cultures ofEscherichia coliagainst nitrosative stress

(2016) Jing Wang et al.   MOLECULAR MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

(2016) D. F. R. Cleary et al.   PLANT BIOLOGY

Relating salt marsh pore water geochemistry patterns to vegetation zones and hydrologic influences

(2016) Kevan B. Moffett et al.   WATER RESOURCES RESEARCH

The effect of increased nitrate loading on nitrate reduction via denitrification and DNRA in salt marsh sediments

(2016) Ketil Koop-Jakobsen et al.   LIMNOLOGY AND OCEANOGRAPHY

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Spatial and temporal variability in carbon dioxide and methane exchange at three coastal marshes along a salinity gradient in a northern Gulf of Mexico estuary

(2015) Benjamin J. Wilson et al.   BIOGEOCHEMISTRY

Archaeal enrichment in the hypoxic zone in the northern Gulf of Mexico

(2015) Lauren E. Gillies et al.   ENVIRONMENTAL MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Microbial Community Composition and Extracellular Enzyme Activities Associated with Juncus roemerianus and Spartina alterniflora Vegetated Sediments in Louisiana Saltmarshes

(2015) Anthony J. Rietl et al.   MICROBIAL ECOLOGY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

(2015) Carmen Scheuner et al.   Standards in Genomic Sciences

The Dynamics of Plant-Mediated Sediment Oxygenation in Spartina anglica Rhizospheres—a Planar Optode Study

(2014) Ketil Koop-Jakobsen et al.   Estuaries and Coasts

Changes in the global value of ecosystem services

(2014) Robert Costanza et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Biodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations

(2014) Ashutosh Awasthi et al.   ISME Journal

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Prokaryotes in salt marsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity

(2012) Vanessa Oliveira et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates

(2012) Jennifer L Bowen et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Bacterial Diversity Stabilizes Community Productivity

(2012) Nico Eisenhauer et al.   PLoS One

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrogen Pools of Macrophyte Species in a Coastal Lagoon Salt Marsh: Implications for Seasonal Storage and Dispersal

(2011) Tracy Elsey-Quirk et al.   Estuaries and Coasts

Ecosystem Responses of a Tidal Freshwater Marsh Experiencing Saltwater Intrusion and Altered Hydrology

(2011) Scott C. Neubauer   Estuaries and Coasts

Salt Marsh Carbon Pool Distribution in a Mid-Atlantic Lagoon, USA: Sea Level Rise Implications

(2011) Tracy Elsey-Quirk et al.   WETLANDS

Wetlands as Sinks for Reactive Nitrogen at Continental and Global Scales: A Meta-Analysis

(2010) Stephen J. Jordan et al.   ECOSYSTEMS

Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities

(2010) Vanessa Oliveira et al.   MICROBIAL ECOLOGY

Responses of Salt Marsh Plant Rhizosphere Diazotroph Assemblages to Changes in Marsh Elevation, Edaphic Conditions and Plant Host Species

(2010) Debra A. Davis et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE

Microbial Community Composition and Denitrifying Enzyme Activities in Salt Marsh Sediments

(2008) Y. Cao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of Spartina and Juncus on Saltmarsh Sediments. I. Pore Water Geochemistry

(2008) Carla M. Koretsky et al.   CHEMICAL GEOLOGY