Loss of microbial diversity does not decrease γ-HCH degradation but increases methanogenesis in flooded paddy soil

Specialized metabolic functions of keystone taxa sustain soil microbiome stability

(2021) Weibing Xun et al.   Microbiome

Multiple elements of soil biodiversity drive ecosystem functions across biomes

(2020) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality

(2020) Zhenghu Zhou et al.   Nature Communications

Land use change: A key ecological disturbance declines soil microbial biomass in dry tropical uplands

(2019) Shashank Tiwari et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Synchronous response in methanogenesis and anaerobic degradation of pentachlorophenol in flooded soil

(2019) Min Zhu et al.   JOURNAL OF HAZARDOUS MATERIALS

Losses in microbial functional diversity reduce the rate of key soil processes

(2019) Chanda Trivedi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Improved synergistic dechlorination of PCP in flooded soil microcosms with supplementary electron donors, as revealed by strengthened connections of functional microbial interactome

(2019) Min Zhu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assembly of root-associated microbiomes of typical rice cultivars in response to lindane pollution

(2019) Jiayin Feng et al.   ENVIRONMENT INTERNATIONAL

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Diversity-triggered deterministic bacterial assembly constrains community functions

(2019) Weibing Xun et al.   Nature Communications

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

OUP accepted manuscript

(2018)   BIOINFORMATICS

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Assessment of heavy metal pollution and human health risks in urban soils around an electronics manufacturing facility

(2018) Wei Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Organic contamination and remediation in the agricultural soils of China: A critical review

(2018) Jianteng Sun et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Typical Soil Redox Processes in Pentachlorophenol Polluted Soil Following Biochar Addition

(2018) Min Zhu et al.   Frontiers in Microbiology

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Nitrate supply and sulfate-reducing suppression facilitate the removal of pentachlorophenol in a flooded mangrove soil

(2018) Jie Cheng et al.   ENVIRONMENTAL POLLUTION

Changes in temperature alter the relationship between biodiversity and ecosystem functioning

(2018) Francisca C. García et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decreased plant productivity resulting from plant group removal experiment constrains soil microbial functional diversity

(2017) Ximei Zhang et al.   GLOBAL CHANGE BIOLOGY

Microbial-enhanced lindane removal by sugarcane ( Saccharum officinarum ) in doped soil-applications in phytoremediation and bioaugmentation

(2017) Jaseetha Abdul Salam et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Transient negative biochar effects on plant growth are strongest after microbial species loss

(2017) W.H. Gera Hol et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

(2017) Zhaojing Zhang et al.   Scientific Reports

The depleted mineralization of the fungicide chlorothalonil derived from loss in soil microbial diversity

(2017) Adijailton Jose de Souza et al.   Scientific Reports

Effects of gamma irradiation on soil biological communities and C and N pools in a clay loam soil

(2016) Shixiu Zhang et al.   APPLIED SOIL ECOLOGY

Distribution of Metabolically Active Prokaryotes (Archaea and Bacteria) throughout the Profiles of Chernozem and Brown Semidesert Soil

(2016) M. V. Semenov et al.   EURASIAN SOIL SCIENCE

Shifting grassland plant community structure drives positive interactive effects of warming and diversity on aboveground net primary productivity

(2016) Jane M. Cowles et al.   GLOBAL CHANGE BIOLOGY

Effectiveness of ecological rescue for altered soil microbial communities and functions

(2016) Kadiya Calderón et al.   ISME Journal

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

The effect of varying gamma irradiation doses and soil moisture content on nematodes, the microbial communities and mineral nitrogen

(2015) Mesfin Tsegaye Gebremikael et al.   APPLIED SOIL ECOLOGY

Significant alteration of soil bacterial communities and organic carbon decomposition by different long-term fertilization management conditions of extremely low-productivity arable soil in South China

(2015) Weibing Xun et al.   ENVIRONMENTAL MICROBIOLOGY

Coupling between Pentachlorophenol Dechlorination and Soil Redox As Revealed by Stable Carbon Isotope, Microbial Community Structure, and Biogeochemical Data

(2015) Yan Xu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The roles of methanogens and acetogens in dechlorination of trichloroethene using different electron donors

(2015) Li-Lian Wen et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Loss of microbial diversity in soils is coincident with reductions in some specialized functions

(2014) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

Potential for polychlorinated biphenyl biodegradation in sediments from Indiana Harbor and Ship Canal

(2014) Yi Liang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evaluation of Sediment Contamination by Heavy Metals, Organochlorinated Pesticides, and Polycyclic Aromatic Hydrocarbons in the Berre Coastal Lagoon (Southeast France)

(2013) M. Arienzo et al.   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Nutrient enrichment, biodiversity loss, and consequent declines in ecosystem productivity

(2013) F. Isbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced abiotic and biotic contributions to dechlorination of pentachlorophenol during Fe(III) reduction by an iron-reducing bacterium Clostridium beijerinckii Z

(2013) Yan Xu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Contrasting Euryarchaeota communities between upland and paddy soils exhibited similar pH-impacted biogeographic patterns

(2013) Hang-Wei Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

(2013) J. Zhou et al.   mBio

A global synthesis reveals biodiversity loss as a major driver of ecosystem change

(2012) David U. Hooper et al.   NATURE

Impacts of Biodiversity Loss

(2012) B. Cardinale   SCIENCE

Soil inoculation method determines the strength of plant–soil interactions

(2012) Tess F.J. van de Voorde et al.   SOIL BIOLOGY & BIOCHEMISTRY

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of Archaea: towards the universal identification of living organisms

(2011) BÉDIS DRIDI et al.   APMIS

Dichloromethane Fermentation by a Dehalobacter sp. in an Enrichment Culture Derived from Pristine River Sediment

(2011) Shandra D. Justicia-Leon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Mineral transformations associated with goethite reduction by Methanosarcina barkeri

(2011) Deng Liu et al.   CHEMICAL GEOLOGY

Abundance, Diversity and Activity of Sulfate-Reducing Prokaryotes in Heavy Metal-Contaminated Sediment from a Salt Marsh in the Medway Estuary (UK)

(2011) Laurent Quillet et al.   MARINE BIOTECHNOLOGY

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology

(2008) Cindy J. Smith et al.   FEMS MICROBIOLOGY ECOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA