Increasing environmental filtering of diazotrophic communities with a decade of latitudinal soil transplantation

An amplification-selection model for quantified rhizosphere microbiota assembly

(2020) Xiaolin Wang et al.   Science Bulletin

Soil microbial communities affected by vegetation, topography and soil properties in a forest ecosystem

(2020) Samaneh Tajik et al.   APPLIED SOIL ECOLOGY

Deterministic Assembly and Diversity Gradient Altered the Biofilm Community Performances of Bioreactors

(2019) Zhaojing Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes

(2019) Mengxin Zhao et al.   MOLECULAR ECOLOGY

Climate warming accelerates temporal scaling of grassland soil microbial biodiversity

(2019) Xue Guo et al.   Nature Ecology & Evolution

Experimental warming alters the community composition, diversity, and N 2 fixation activity of peat moss ( Sphagnum fallax ) microbiomes

(2019) Alyssa A. Carrell et al.   GLOBAL CHANGE BIOLOGY

Effects of Warming and Nitrogen Addition on the Soil Bacterial Community in a Subtropical Chinese Fir Plantation

(2019) Xie et al.   Forests

Suppressed N fixation and diazotrophs after four decades of fertilization

(2019) Kunkun Fan et al.   Microbiome

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial temperature sensitivity and biomass change explain soil carbon loss with warming

(2018) Tom W. N. Walker et al.   Nature Climate Change

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Decomposition responses to climate depend on microbial community composition

(2018) Sydney I. Glassman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant diversity maintains multiple soil functions in future environments

(2018) Nico Eisenhauer et al.   eLife

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Temperature increase reduces global yields of major crops in four independent estimates

(2017) Chuang Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental and observational studies find contrasting responses of soil nutrients to climate change

(2017) ZY Yuan et al.   eLife

Balanced Fertilization Decreases Environmental Filtering on Soil Bacterial Community Assemblage in North China

(2017) Youzhi Feng et al.   Frontiers in Microbiology

The interactive effects of temperature and moisture on nitrogen fixation in two temperate-arctic mosses

(2017) Kathrin Rousk et al.   Theoretical and Experimental Plant Physiology

Microorganisms and ocean global change

(2017) David A. Hutchins et al.   Nature Microbiology

Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function

(2017) et al.   Processes

Seasonal variation in nifH abundance and expression of cyanobacterial communities associated with boreal feather mosses

(2016) Denis Warshan et al.   ISME Journal

Biogeographic patterns of soil diazotrophic communities across six forests in the North America

(2016) Qichao Tu et al.   MOLECULAR ECOLOGY

The nitrogen fix

(2016) E. Stokstad   SCIENCE

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

(2016) Kai Xue et al.   Nature Climate Change

Global nitrogen budgets in cereals: A 50-year assessment for maize, rice, and wheat production systems

(2016) J. K. Ladha et al.   Scientific Reports

Effects of long-term application of chemical and organic fertilizers on the abundance of microbial communities involved in the nitrogen cycle

(2015) Ruibo Sun et al.   APPLIED SOIL ECOLOGY

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

(2015) Yuting Liang et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Over 150 Years of Long-Term Fertilization Alters Spatial Scaling of Microbial Biodiversity

(2015) Yuting Liang et al.   mBio

Mesocosms Reveal Ecological Surprises from Climate Change

(2015) Damien A. Fordham   PLOS BIOLOGY

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

(2014) John Christian Gaby et al.   Database-The Journal of Biological Databases and Curation

A long-term field experiment of soil transplantation demonstrating the role of contemporary geographic separation in shaping soil microbial community structure

(2014) Bo Sun et al.   Ecology and Evolution

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

(2013) Chengwei Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence

(2013) Lauren C. Cline et al.   ENVIRONMENTAL MICROBIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool

(2013) Q. Wang et al.   mBio

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

Mechanisms determining the fate of dispersed bacterial communities in new environments

(2012) Anna J Székely et al.   ISME Journal

Bacterial diversity of bryophyte-dominant biological soil crusts and associated mites

(2012) S.A. Moquin et al.   JOURNAL OF ARID ENVIRONMENTS

Biodiversity loss and its impact on humanity

(2012) Bradley J. Cardinale et al.   NATURE

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

A Comprehensive Evaluation of PCR Primers to Amplify the nifH Gene of Nitrogenase

(2012) John Christian Gaby et al.   PLoS One

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Rapid Range Shifts of Species Associated with High Levels of Climate Warming

(2011) I.-C. Chen et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Transplantation of organic surface horizons of boreal soils into warmer regions alters microbiology but not the temperature sensitivity of decomposition

(2009) PEKKA VANHALA et al.   GLOBAL CHANGE BIOLOGY

The assembly and disassembly of ecological networks

(2009) J. Bascompte et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Variation in the active diazotrophic community in rice paddy—nifH PCR-DGGE analysis of rhizosphere and bulk soil

(2008) Ingvild Wartiainen et al.   APPLIED SOIL ECOLOGY

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal