Recent advances in the regulation of plant miRNA biogenesis

Light-stabilized FHA2 suppresses miRNA biogenesis through interactions with DCL1 and HYL1

(2021) Seung Jun Park et al.   Molecular Plant

A conserved sequence signature is essential for robust plant miRNA biogenesis

(2020) Anushree Narjala et al.   NUCLEIC ACIDS RESEARCH

SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis

(2020) Mateusz Bajczyk et al.   NUCLEIC ACIDS RESEARCH

Direct and Indirect Targets of the Arabidopsis Seed Transcription Factor ABSCISIC ACID INSENSITIVE3

(2020) Ran Tian et al.   PLANT JOURNAL

Hyponastic Leaves 1 protects pri-miRNAs from nuclear exosome attack

(2020) Shuai Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mRNA adenosine methylase (MTA) deposits m6A on pri-miRNAs to modulate miRNA biogenesis inArabidopsis thaliana

(2020) Susheel Sagar Bhat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities

(2020) Shengjun Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of key sequence features required for microRNA biogenesis in plants

(2020) Arantxa M. L. Rojas et al.   Nature Communications

HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing

(2020) Damian A. Cambiagno et al.   Molecular Plant

Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis

(2020) Dongqi Xie et al.   NATURE CELL BIOLOGY

Plant microRNAs: Biogenesis, Homeostasis, and Degradation

(2019) Junli Wang et al.   Frontiers in Plant Science

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis

(2019) Suikang Wang et al.   PLANT CELL

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

Fine-Tuning of MiR528 Accumulation Modulates Flowering Time in Rice

(2019) Rongxin Yang et al.   Molecular Plant

Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana

(2019) Junli Wang et al.   NUCLEIC ACIDS RESEARCH

AGO-unbound cytosolic pool of mature miRNAs in plant cells reveals a novel regulatory step at AGO1 loading

(2019) Ágnes Dalmadi et al.   NUCLEIC ACIDS RESEARCH

Light triggers the miRNA-biogenetic inconsistency for de-etiolated seedling survivability in Arabidopsis thaliana

(2019) Suk Won Choi et al.   Molecular Plant

A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation

(2018) Natalia P. Achkar et al.   DEVELOPMENTAL CELL

Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

(2018) Nicolas G. Bologna et al.   MOLECULAR CELL

SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis

(2018) Shengjun Li et al.   NUCLEIC ACIDS RESEARCH

MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis

(2018) Shengjun Li et al.   PLANT CELL

Plant Small Non-coding RNAs and Their Roles in Biotic Stresses

(2018) Eleanor J. Brant et al.   Frontiers in Plant Science

SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production

(2018) Zhiye Wang et al.   NATURE

piRNA-Guided Genome Defense: From Biogenesis to Silencing

(2018) Benjamin Czech et al.   Annual Review of Genetics

Chloroplast-to-Nucleus Signaling Regulates MicroRNA Biogenesis in Arabidopsis

(2018) Xiaofeng Fang et al.   DEVELOPMENTAL CELL

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

Efficiency and precision of microRNA biogenesis modes in plants

(2018) Belén Moro et al.   NUCLEIC ACIDS RESEARCH

The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs

(2018) Qiang Cai et al.   Nature Communications

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

ALKBH10B Is an RNAN6-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition

(2017) Hong-Chao Duan et al.   PLANT CELL

The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing

(2017) Tianran Jia et al.   PLANT CELL

Evolutionary Footprints Reveal Insights into Plant MicroRNA Biogenesis

(2017) Uciel Chorostecki et al.   PLANT CELL

The functions of plant small RNAs in development and in stress responses

(2017) Shengjun Li et al.   PLANT JOURNAL

KETCH1 imports HYL1 to nucleus for miRNA biogenesis inArabidopsis

(2017) Zhonghui Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex inArabidopsis

(2017) Shengjun Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytochrome-interacting factors directly suppress MIR156 expression to enhance shade-avoidance syndrome in Arabidopsis

(2017) Yurong Xie et al.   Nature Communications

The SnRK2 kinases modulate miRNA accumulation in Arabidopsis

(2017) Jun Yan et al.   PLoS Genetics

The regulation and functions of the nuclear RNA exosome complex

(2016) Cornelia Kilchert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Salt Stress Reveals a New Role for ARGONAUTE1 in miRNA Biogenesis at the Transcriptional and Posttranscriptional Levels

(2016) Jakub Dolata et al.   PLANT PHYSIOLOGY

Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5

(2016) Xian Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DELAY OF GERMINATION1(DOG1) regulates both seed dormancy and flowering time through microRNA pathways

(2016) Heqiang Huo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRNA863-3p sequentially targets negative immune regulator ARLPKs and positive regulator SERRATE upon bacterial infection

(2016) Dongdong Niu et al.   Nature Communications

Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis

(2016) Ziwei Li et al.   PLoS Genetics

MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants

(2016) Varsha Shriram et al.   Frontiers in Plant Science

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs

(2015) Andrzej Zielezinski et al.   BMC PLANT BIOLOGY

CMA33/XCT Regulates Small RNA Production through Modulating the Transcription of Dicer-Like Genes in Arabidopsis

(2015) Xiaofeng Fang et al.   Molecular Plant

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis

(2015) Tao Chen et al.   NUCLEIC ACIDS RESEARCH

Epigenetic Regulation of Vegetative Phase Change in Arabidopsis

(2015) Mingli Xu et al.   PLANT CELL

THO2, a core member of the THO/TREX complex, is required for microRNA production in Arabidopsis

(2015) Anchilie G. Francisco-Mangilet et al.   PLANT JOURNAL

KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1

(2015) Patricia Karlsson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phytophthoraeffector targets a novel component of small RNA pathway in plants to promote infection

(2015) Yongli Qiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Roles of Arabidopsis CDF2 in Transcriptional and Posttranscriptional Regulation of Primary MicroRNAs

(2015) Zhenfei Sun et al.   PLoS Genetics

Transcription and processing of primary microRNAs are coupled by Elongator complex in Arabidopsis

(2015) Xiaofeng Fang et al.   Nature Plants

MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase MPK3 in both rice and Arabidopsis

(2014) Badmi Raghuram et al.   FEBS Journal

Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis

(2014) Tino Köster et al.   NUCLEIC ACIDS RESEARCH

COP1 E3 ligase protects HYL1 to retain microRNA biogenesis

(2014) Seok Keun Cho et al.   Nature Communications

PRL1, an RNA-Binding Protein, Positively Regulates the Accumulation of miRNAs and siRNAs in Arabidopsis

(2014) Shuxin Zhang et al.   PLoS Genetics

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis

(2013) Xueying Wu et al.   CELL RESEARCH

Introns of plant pri-miRNAs enhance miRNA biogenesis

(2013) Dawid Bielewicz et al.   EMBO REPORTS

Enhanced microRNA accumulation through stemloop-adjacent introns

(2013) Rebecca Schwab et al.   EMBO REPORTS

Multiple RNA recognition patterns during microRNA biogenesis in plants

(2013) N. G. Bologna et al.   GENOME RESEARCH

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1

(2013) Hongliang Zhu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

NOT2 Proteins Promote Polymerase II-Dependent Transcription and Interact with Multiple MicroRNA Biogenesis Factors in Arabidopsis

(2013) L. Wang et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

RACK1 scaffold proteins influence miRNA abundance in Arabidopsis

(2013) Corinna Speth et al.   PLANT JOURNAL

MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis

(2013) Fan Jia et al.   PLANT MOLECULAR BIOLOGY

Identification of Direct Targets of FUSCA3, a Key Regulator of Arabidopsis Seed Development

(2013) F. Wang et al.   PLANT PHYSIOLOGY

CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts

(2013) S. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

POWERDRESS and Diversified Expression of the MIR172 Gene Family Bolster the Floral Stem Cell Network

(2013) Rae Eden Yumul et al.   PLoS Genetics

Fast-Forward Genetics Identifies Plant CPL Phosphatases as Regulators of miRNA Processing Factor HYL1

(2012) Pablo A. Manavella et al.   CELL

Origins and Evolution of MicroRNA Genes in Plant Species

(2012) Masafumi Nozawa et al.   Genome Biology and Evolution

Stress-Induced Alternative Splicing Provides a Mechanism for the Regulation of MicroRNA Processing in Arabidopsis thaliana

(2012) Kang Yan et al.   MOLECULAR CELL

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis

(2012) Samir Ben Chaabane et al.   NUCLEIC ACIDS RESEARCH

CDKF;1 and CDKD Protein Kinases Regulate Phosphorylation of Serine Residues in the C-Terminal Domain ofArabidopsisRNA Polymerase II

(2012) Mohsen Hajheidari et al.   PLANT CELL

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis

(2012) G. Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis

(2012) X. Zhan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surveillance of 3′ Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis

(2012) Yukio Kurihara et al.   G3-Genes Genomes Genetics

Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

(2011) Hongliang Zhu et al.   CELL

LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers

(2011) B. Grigorova et al.   DEVELOPMENT

The role of Mediator in small and long noncoding RNA production inArabidopsis thaliana

(2011) Yun Ju Kim et al.   EMBO JOURNAL

N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO

(2011) Guifang Jia et al.   Nature Chemical Biology

Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation

(2010) Huiyong Zhang et al.   PLANT JOURNAL

Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis

(2009) Wanhui Kim et al.   CELL RESEARCH

Identification of MicroRNA Processing Determinants by Random Mutagenesis of Arabidopsis MIR172a Precursor

(2009) Julieta L. Mateos et al.   CURRENT BIOLOGY

RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis

(2009) Liang Song et al.   CURRENT BIOLOGY

Structure Determinants for Accurate Processing of miR172a in Arabidopsis thaliana

(2009) Schallum Werner et al.   CURRENT BIOLOGY

A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159

(2009) Nicolás G Bologna et al.   EMBO JOURNAL

Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing

(2009) J. T. Cuperus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Two Cap-Binding Proteins CBP20 and CBP80 are Involved in Processing Primary MicroRNAs

(2008) S. Kim et al.   PLANT AND CELL PHYSIOLOGY

MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor

(2008) S. Zhong et al.   PLANT CELL

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

(2008) B. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SINE RNA Induces Severe Developmental Defects in Arabidopsis thaliana and Interacts with HYL1 (DRB1), a Key Member of the DCL1 Complex

(2008) Marie-Noëlle Pouch-Pélissier et al.   PLoS Genetics