Kin selection explains the evolution of cooperation in the gut microbiota

Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores

(2019) Gabriel E. Leventhal et al.   Journal of the Royal Society Interface

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

(2019) Nandita R. Garud et al.   PLOS BIOLOGY

Adaptive Evolution within Gut Microbiomes of Healthy People

(2019) Shijie Zhao et al.   Cell Host & Microbe

Scientists’ warning to humanity: microorganisms and climate change

(2019) Ricardo Cavicchioli et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial siderophores in community and host interactions

(2019) Jos Kramer et al.   NATURE REVIEWS MICROBIOLOGY

Population Genetics in the Human Microbiome

(2019) Nandita R. Garud et al.   TRENDS IN GENETICS

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

No effect of intraspecific relatedness on public goods cooperation in a complex community

(2018) Siobhán O'Brien et al.   EVOLUTION

PANNZER2: a rapid functional annotation web server

(2018) Petri Törönen et al.   NUCLEIC ACIDS RESEARCH

Privatisation rescues function following loss of cooperation

(2018) Sandra Breum Andersen et al.   eLife

The evolution of siderophore production as a competitive trait

(2017) Rene Niehus et al.   EVOLUTION

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Sociomics: Using Omic Approaches to Understand Social Evolution

(2017) Melanie Ghoul et al.   TRENDS IN GENETICS

Killing by Type VI secretion drives genetic phase separation and correlates with increased cooperation

(2017) Luke McNally et al.   Nature Communications

Strain profiling and epidemiology of bacterial species from metagenomic sequencing

(2017) Davide Albanese et al.   Nature Communications

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

(2017) Jaeyun Sung et al.   Nature Communications

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Therapeutic manipulation of the microbiota: past, present, and considerations for the future

(2016) V.B. Young   CLINICAL MICROBIOLOGY AND INFECTION

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

(2016) Stephen Nayfach et al.   GENOME RESEARCH

Quorum sensing protects bacterial co-operation from exploitation by cheats

(2016) Richard C Allen et al.   ISME Journal

Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation

(2016) Hilary P. Browne et al.   NATURE

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

Investigating the Consequences of Interference between Multiple CD8+ T Cell Escape Mutations in Early HIV Infection

(2016) Victor Garcia et al.   PLoS Computational Biology

Microbiome: Ecology of stable gut communities

(2016) Luke McNally et al.   Nature Microbiology

The sociality of bioremediation: Hijacking the social lives of microbial populations to clean up heavy metal contamination

(2015) S. O'Brien et al.   EMBO REPORTS

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Long-term social dynamics drive loss of function in pathogenic bacteria

(2015) Sandra Breum Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conducting Meta-Analyses inRwith themetaforPackage

(2015) Wolfgang Viechtbauer   Journal of Statistical Software

War and peace: social interactions in infections

(2014) H. C. Leggett et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

First principles of Hamiltonian medicine

(2014) B. Crespi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cooperative secretions facilitate host range expansion in bacteria

(2014) Luke McNally et al.   Nature Communications

Solutions to the Public Goods Dilemma in Bacterial Biofilms

(2013) Knut Drescher et al.   CURRENT BIOLOGY

Natural selection. VII. History and interpretation of kin selection theory

(2013) S. A. Frank   JOURNAL OF EVOLUTIONARY BIOLOGY

Bacterial cheating drives the population dynamics of cooperative antibiotic resistance plasmids

(2013) Eugene A Yurtsev et al.   Molecular Systems Biology

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Synergy and Group Size in Microbial Cooperation

(2012) Daniel M. Cornforth et al.   AMERICAN NATURALIST

Care for kin: within-group relatedness and allomaternal care are positively correlated and conserved throughout the mammalian phylogeny

(2012) M. Briga et al.   Biology Letters

Towards synthetic microbial consortia for bioprocessing

(2012) Jasmine Shong et al.   CURRENT OPINION IN BIOTECHNOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Cooperative breeding and monogamy in mammalian societies

(2012) D. Lukas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Dynamics of Cooperative Bacterial Virulence in the Field

(2012) B. Raymond et al.   SCIENCE

Understanding microbial cooperation

(2011) James A. Damore et al.   JOURNAL OF THEORETICAL BIOLOGY

Inclusive fitness theory and eusociality

(2011) Patrick Abbot et al.   NATURE

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

Clonal spread of methicillin-resistant Staphylococcus pseudintermedius in Europe and North America: an international multicentre study

(2010) V. Perreten et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

(2010) J. D. HADFIELD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Promiscuity and the evolutionary transition to complex societies

(2010) Charlie K. Cornwallis et al.   NATURE

The evolution of eusociality

(2010) Martin A. Nowak et al.   NATURE

A Generalization of Hamilton's Rule for the Evolution of Microbial Cooperation

(2010) j. smith et al.   SCIENCE

Quantification of Social Behavior in D. discoideum Reveals Complex Fixed and Facultative Strategies

(2009) Neil J. Buttery et al.   CURRENT BIOLOGY

Kin structure, ecology and the evolution of social organization in shrimp: a comparative analysis

(2009) J. E. Duffy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

FLO1 Is a Variable Green Beard Gene that Drives Biofilm-like Cooperation in Budding Yeast

(2008) Scott Smukalla et al.   CELL

A simple and general explanation for the evolution of altruism

(2008) J. A Fletcher et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES