- Home
- Publications
- Publication Search
- Publication Details
Title
Revealing nascent RNA processing dynamics with nano-COP
Authors
Keywords
-
Journal
Nature Protocols
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-30
DOI
10.1038/s41596-020-00469-y
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Using TTchem-seq for profiling nascent transcription and measuring transcript elongation
- (2020) Lea H. Gregersen et al. Nature Protocols
- Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms
- (2020) Kerstin C. Maier et al. GENOME RESEARCH
- Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED
- (2020) Sam Kovaka et al. NATURE BIOTECHNOLOGY
- Global donor and acceptor splicing site kinetics in human cells
- (2019) Leonhard Wachutka et al. eLife
- A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes
- (2019) Charlotte Soneson et al. Nature Communications
- Nanopore native RNA sequencing of a human poly(A) transcriptome
- (2019) Rachael E. Workman et al. NATURE METHODS
- Splicing Kinetics and Coordination Revealed by Direct Nascent RNA Sequencing through Nanopores
- (2019) Heather L. Drexler et al. MOLECULAR CELL
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Long-read sequencing of nascent RNA reveals coupling among RNA processing events
- (2018) Lydia Herzel et al. GENOME RESEARCH
- TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding
- (2018) Jeremy A Schofield et al. NATURE METHODS
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Widespread intra-dependencies in the removal of introns from human transcripts
- (2017) Seong Won Kim et al. NUCLEIC ACIDS RESEARCH
- Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II
- (2016) Fernando Carrillo Oesterreich et al. CELL
- Genome-wide profiling of RNA polymerase transcription at nucleotide resolution in human cells with native elongating transcript sequencing
- (2016) Andreas Mayer et al. Nature Protocols
- TT-seq maps the human transient transcriptome
- (2016) Björn Schwalb et al. SCIENCE
- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies
- (2014) Michal Rabani et al. CELL
- Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
- (2014) Nova Fong et al. GENES & DEVELOPMENT
- Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications
- (2014) A. Veloso et al. GENOME RESEARCH
- How Slow RNA Polymerase II Elongation Favors Alternative Exon Skipping
- (2014) Gwendal Dujardin et al. MOLECULAR CELL
- Kinetic competition during the transcription cycle results in stochastic RNA processing
- (2014) Antoine Coulon et al. eLife
- Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells
- (2013) Charles G. Danko et al. MOLECULAR CELL
- Live-Cell Visualization of Pre-mRNA Splicing with Single-Molecule Sensitivity
- (2013) Robert M. Martin et al. Cell Reports
- Metabolic Labeling of Newly Transcribed RNA for High Resolution Gene Expression Profiling of RNA Synthesis, Processing and Decay in Cell Culture
- (2013) Bernd Rädle et al. Jove-Journal of Visualized Experiments
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution
- (2012) L. Windhager et al. GENOME RESEARCH
- Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
- (2012) H. Tani et al. GENOME RESEARCH
- Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
- (2011) Ryan K. Dale et al. BIOINFORMATICS
- Nascent transcript sequencing visualizes transcription at nucleotide resolution
- (2011) L. Stirling Churchman et al. NATURE
- Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
- (2011) Michal Rabani et al. NATURE BIOTECHNOLOGY
- The In Vivo Kinetics of RNA Polymerase II Elongation during Co-Transcriptional Splicing
- (2011) Yehuda Brody et al. PLOS BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Rates of in situ transcription and splicing in large human genes
- (2009) Jarnail Singh et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
- (2008) L. Dolken et al. RNA
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search