Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program
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Title
Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program
Authors
Keywords
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Journal
NATURE IMMUNOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-03-09
DOI
10.1038/s41590-021-00883-8
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- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
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- Fecal Lipocalin 2, a Sensitive and Broadly Dynamic Non-Invasive Biomarker for Intestinal Inflammation
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