Sex, Food, and the Gut Microbiota: Disparate Response to Caloric Restriction Diet with Fiber Supplementation in Women and Men

Bacteroides uniformis combined with fiber amplifies metabolic and immune benefits in obese mice

(2021) Inmaculada López-Almela et al.   Gut Microbes

Precision Microbiome Modulation with Discrete Dietary Fiber Structures Directs Short-Chain Fatty Acid Production

(2020) Edward C. Deehan et al.   Cell Host & Microbe

Safety Assessment of Bacteroides Uniformis CECT 7771, a Symbiont of the Gut Microbiota in Infants

(2020) Eva M. Gómez del Pulgar et al.   Nutrients

Health and disease markers correlate with gut microbiome composition across thousands of people

(2020) Ohad Manor et al.   Nature Communications

DIABLO: an integrative approach for identifying key molecular drivers from multi-omic assays

(2019) Amrit Singh et al.   BIOINFORMATICS

Carbohydrate quality and human health: a series of systematic reviews and meta-analyses

(2019) Andrew Reynolds et al.   LANCET

Sex differences in the gut microbiota as potential determinants of gender predisposition to disease

(2019) Jose A. Santos-Marcos et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids

(2019) Kai Wang et al.   Cell Reports

Microbial abundance, activity and population genomic profiling with mOTUs2

(2019) Alessio Milanese et al.   Nature Communications

Alterations of Bile Acids and Gut Microbiota in Obesity Induced by High Fat Diet in Rat Model

(2019) Hong Lin et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Unconjugated and secondary bile acid profiles in response to higher-fat, lower-carbohydrate diet and associated with related gut microbiota: A 6-month randomized controlled-feeding trial

(2019) Yi Wan et al.   CLINICAL NUTRITION

The Integrative Human Microbiome Project

(2019)   NATURE

Pretreatment Prevotella-to-Bacteroides ratio and markers of glucose metabolism as prognostic markers for dietary weight loss maintenance

(2019) Mads F. Hjorth et al.   EUROPEAN JOURNAL OF CLINICAL NUTRITION

Metagenomic analysis of bile salt biotransformation in the human gut microbiome

(2019) Promi Das et al.   BMC GENOMICS

Prevotella Abundance Predicts Weight Loss Success in Healthy, Overweight Adults Consuming a Whole-Grain Diet Ad Libitum: A Post Hoc Analysis of a 6-Wk Randomized Controlled Trial

(2019) Lars Christensen et al.   JOURNAL OF NUTRITION

Diet–microbiota interactions and personalized nutrition

(2019) Aleksandra A. Kolodziejczyk et al.   NATURE REVIEWS MICROBIOLOGY

Mucin O-glycans facilitate symbiosynthesis to maintain gut immune homeostasis

(2019) Takahiro Yamada et al.   EBioMedicine

Caloric restriction, longevity and aging: Recent contributions from human and non-human primate studies

(2019) Fabien Pifferi et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Dietary fiber and health outcomes: an umbrella review of systematic reviews and meta-analyses

(2018) Nicola Veronese et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

OUP accepted manuscript

(2018)   AMERICAN JOURNAL OF CLINICAL NUTRITION

A Validated, Fast Method for Quantification of Sterols and Gut Microbiome Derived 5α/β-Stanols in Human Feces by Isotope Dilution LC–High-Resolution MS

(2018) Hans-Frieder Schött et al.   ANALYTICAL CHEMISTRY

Gut commensalParabacteroides goldsteiniiplays a predominant role in the anti-obesity effects of polysaccharides isolated fromHirsutella sinensis

(2018) Tsung-Ru Wu et al.   GUT

The effect of viscous soluble fiber on blood pressure: A systematic review and meta-analysis of randomized controlled trials

(2018) K. Khan et al.   NUTRITION METABOLISM AND CARDIOVASCULAR DISEASES

The epidemiology of obesity

(2018) Yu Chung Chooi et al.   METABOLISM-CLINICAL AND EXPERIMENTAL

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inulin-type fructan degradation capacity of Clostridium cluster IV and XIVa butyrate-producing colon bacteria and their associated metabolic outcomes

(2017) F. Moens et al.   Beneficial Microbes

Relevance in the Use of Appropriate Internal Standards for Accurate Quantification Using LC–MS/MS: Tauro-Conjugated Bile Acids as an Example

(2016) Sabrina Krautbauer et al.   ANALYTICAL CHEMISTRY

Bifidobacterial inulin-type fructan degradation capacity determines cross-feeding interactions between bifidobacteria and Faecalibacterium prausnitzii

(2016) Frédéric Moens et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Safety Assessment of Bacteroides uniformis CECT 7771 Isolated from Stools of Healthy Breast-Fed Infants

(2016) M. Leonor Fernández-Murga et al.   PLoS One

Impact of dietary fiber and fat on gut microbiota re-modeling and metabolic health

(2016) Alfonso Benítez-Páez et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Intestinal Microbiota Is Influenced by Gender and Body Mass Index

(2016) Carmen Haro et al.   PLoS One

Promoting Health and Longevity through Diet: From Model Organisms to Humans

(2015) Luigi Fontana et al.   CELL

Child and adolescent obesity: part of a bigger picture

(2015) Tim Lobstein et al.   LANCET

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The effect of a dietary portfolio compared to a DASH-type diet on blood pressure

(2015) D.J.A. Jenkins et al.   NUTRITION METABOLISM AND CARDIOVASCULAR DISEASES

Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway

(2015) Tae-Hwan Jung et al.   Nutrition Research and Practice

Mucin glycan foraging in the human gut microbiome

(2015) Louise E. Tailford et al.   Frontiers in Genetics

Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits

(2014) Filipe De Vadder et al.   CELL

Effects of targeted delivery of propionate to the human colon on appetite regulation, body weight maintenance and adiposity in overweight adults

(2014) Edward S Chambers et al.   GUT

The short chain fatty acid propionate stimulates GLP-1 and PYY secretion via free fatty acid receptor 2 in rodents

(2014) A Psichas et al.   INTERNATIONAL JOURNAL OF OBESITY

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

(2012) Toshiaki Namiki et al.   NUCLEIC ACIDS RESEARCH

Bile Acid Binding Resin Improves Metabolic Control through the Induction of Energy Expenditure

(2012) Mitsuhiro Watanabe et al.   PLoS One

Bacteroides uniformis CECT 7771 Ameliorates Metabolic and Immunological Dysfunction in Mice with High-Fat-Diet Induced Obesity

(2012) Paola Gauffin Cano et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects

(2010) Inés Martínez et al.   PLoS One

Rapid quantification of bile acids and their conjugates in serum by liquid chromatography–tandem mass spectrometry

(2009) Max Scherer et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets

(2008) Weizhong Li et al.   PLoS One

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

(2008) B. V. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA